Skip to main content

Helper package which implements HiCMatrix class for HiCExplorer and pyGenomeTracks

Project description

This library implements the central class of HiCExplorer to manage Hi-C interaction matrices. It is separated from the main project to enable to use of Hi-C matrices in other project without the dependency to HiCExplorer. Moreover, it enables us to use the already separated pyGenomeTracks (former hicPlotTADs) to be used in HiCExplorer because mutual dependencies are resolved.

With version 8 we dropped the support for Python 2.

Read support

  • h5

  • cool

  • hicpro

  • homer

Write support

  • h5

  • cool

  • homer

  • ginteractions

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

HiCMatrix-11.tar.gz (20.4 kB view details)

Uploaded Source

Built Distribution

HiCMatrix-11-py3-none-any.whl (35.7 kB view details)

Uploaded Python 3

File details

Details for the file HiCMatrix-11.tar.gz.

File metadata

  • Download URL: HiCMatrix-11.tar.gz
  • Upload date:
  • Size: 20.4 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.1.0 requests-toolbelt/0.9.1 tqdm/4.32.1 CPython/3.7.4

File hashes

Hashes for HiCMatrix-11.tar.gz
Algorithm Hash digest
SHA256 c810675d7063399338018a9f2e0d21e7f493a30b5f51358a964fea18df06cbca
MD5 767b4f41047598d0c976b8c189d66ab8
BLAKE2b-256 f3da3fc51a8ca0ceabfaf75d3d95786397e0a6f1338356806b4ff7a361a78080

See more details on using hashes here.

Provenance

File details

Details for the file HiCMatrix-11-py3-none-any.whl.

File metadata

  • Download URL: HiCMatrix-11-py3-none-any.whl
  • Upload date:
  • Size: 35.7 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.1.0 requests-toolbelt/0.9.1 tqdm/4.32.1 CPython/3.7.4

File hashes

Hashes for HiCMatrix-11-py3-none-any.whl
Algorithm Hash digest
SHA256 bf472cd844615a90281b1885522bbf9f84d4bc904791020511a64d4ddb061ad8
MD5 c57837db99f0ac73dde3a6c5f3c547b3
BLAKE2b-256 464b0618c840e63f386275d58ce3fb40a1bc2291abb65066f696ed45a43420c9

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page