Fast and customizable simulation of extracellular recordings on Multi-Electrode-Arrays.

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Project description

MEArec: Fast and customizable simulation of extracellular recordings on Multi-Electrode-Arrays

MEArec is a package for generating biophysical extracellular neural recording on Multi-Electrode Arrays (MEA). The recording generations combines a Extracellular Action Potentials (EAP) templates generation and spike trains generation. The recordings are built by convoluting and modulating EAP templates with spike trains and adding noise.

To clone this repo open your terminal and run:

git clone https://github.com/alejoe91/MEArec.git

Installation

The MEArec package can be installed with:

pip install MEArec

or, from the cloned folder:

python setup.py develop

Documentation

The MEArec detailed documentation is here: https://mearec.readthedocs.io/en/latest/

Reference

For further information please refer to the biorXiv preprint: https://www.biorxiv.org/content/10.1101/691642v1

If you use the software, please cite:

@article{buccino2019mearec,
  title={MEArec: a fast and customizable testbench simulator for ground-truth extracellular spiking activity},
  author={Buccino, Alessio P and Einevoll, Gaute T},
  journal={bioRxiv},
  pages={691642},
  year={2019},
  publisher={Cold Spring Harbor Laboratory}
}

Project details

These details have not been verified by PyPI

Project links

Homepage

Release history Release notifications | RSS feed

1.9.1

Apr 6, 2024

1.9.0

May 23, 2023

1.8.0

Jul 18, 2022

1.7.2

May 9, 2021

1.7.1

Apr 30, 2021

1.7.0

Mar 26, 2021

1.5.1

Nov 3, 2020

1.5.0

Oct 15, 2020

1.4.4

Aug 31, 2020

1.4.3

Aug 6, 2020

This version

1.4.2

Jun 30, 2020

1.4.1

Mar 23, 2020

1.4.0

Mar 4, 2020

1.3.6

Aug 1, 2019

1.3.5

Jul 8, 2019

1.3.4

Jul 5, 2019

1.3.3

Jun 28, 2019

1.3.2

Jun 13, 2019

1.3.1

Jun 11, 2019

1.3.0

May 11, 2019

1.2.7

Mar 28, 2019

1.2.6

Mar 27, 2019

1.2.5

Mar 27, 2019

1.2.4

Mar 25, 2019

1.2.3

Mar 22, 2019

1.2.2

Mar 22, 2019

1.2.1

Mar 21, 2019

1.2.0

Mar 20, 2019

1.1.6

Mar 11, 2019

1.1.5

Mar 11, 2019

1.1.4

Feb 21, 2019

1.1.3

Feb 20, 2019

1.1.2

Feb 12, 2019

1.1.1

Jan 19, 2019

1.1.0

Dec 28, 2018

1.0.8

Dec 10, 2018

1.0.7

Nov 26, 2018

1.0.6

Nov 26, 2018

1.0.5

Oct 29, 2018

1.0.4

Oct 22, 2018

1.0.3

Oct 22, 2018

1.0.2

Oct 21, 2018

1.0.1

Oct 18, 2018

1.0.0

Oct 14, 2018

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