Meneco

Metabolic Network Completion. Compute minimal completions to your draft net with reactions from a repair net.

Project description

Installation
============

You can install meneco by running::

$ pip install meneco

Usage
=====

Typical usage is::

$ meneco.py draftnetwork.sbml repairnetwork.sbml seeds.sbml targets.sbml

Samples
=======

Sample files for the reconstruction of ectocarpus are available here:
ectocyc.sbml_ metacyc_16-5.sbml_ seeds.sbml_ targets.sbml_

.. _ectocyc.sbml: http://www.cs.uni-potsdam.de/~sthiele/bioasp/downloads/samples/ectodata/ectocyc.sbml
.. _metacyc_16-5.sbml: http://www.cs.uni-potsdam.de/~sthiele/bioasp/downloads/samples/ectodata/metacyc_16-5.sbml
.. _seeds.sbml: http://www.cs.uni-potsdam.de/~sthiele/bioasp/downloads/samples/ectodata/seeds.sbml
.. _targets.sbml: http://www.cs.uni-potsdam.de/~sthiele/bioasp/downloads/samples/ectodata/targets.sbml

Project details

Release history Release notifications | RSS feed

2.0.2

Apr 28, 2022

2.0.1

Mar 23, 2022

2.0.0

Mar 5, 2020

1.5.3

Mar 1, 2019

1.5.2

Mar 29, 2017

1.5.0

Feb 23, 2016

1.4.3.1

Nov 23, 2015

1.4.3

Nov 23, 2015

1.4.2

May 21, 2014

1.4.1

Mar 5, 2014

1.4

Mar 4, 2014

1.3.2

Jan 21, 2014

1.3.1

Jan 17, 2014

1.3

Jan 16, 2014

1.2

Jan 9, 2014

1.1

Jul 5, 2013

This version

1.0dev pre-release

Dec 4, 2012

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

meneco-1.0dev.tar.gz (7.5 kB view details)

Uploaded Jun 6, 2013 Source

File details

Details for the file meneco-1.0dev.tar.gz.

File metadata

Download URL: meneco-1.0dev.tar.gz
Upload date: Jun 6, 2013
Size: 7.5 kB
Tags: Source
Uploaded using Trusted Publishing? No

File hashes

Hashes for meneco-1.0dev.tar.gz
Algorithm	Hash digest
SHA256	`e4a92f6b9b6db310bb442d457dc31939c9ff1b1beba5af91b2af70be69cc38a5`
MD5	`33a1efbedf551f71b0bfd8dae1f94e15`
BLAKE2b-256	`fbfc94c0b40c9373bf0df1ec2e4eb2817a5817c5856f3b04d4b7fd4de767edfb`