PartSegCore compiled backend,

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  • License: BSD License (BSD-3-Clause)
  • Author: Grzegorz Bokota
  • Tags bioimaging
  • Requires: Python >=3.9
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Project description

PartSegCore_compiled_backend

Contributions Wheels PyPI version Anaconda-Server Badge Python Version Documentation Status Publication DOI

This is a package with all cython/c++ backend for ParSeg

Current release extracted from PartSegCore module to avoid building multiple wheels for the main package and speedup tests.

This package requires libomp for build. On linux it can be installed with apt install libomp-dev or yum install libomp-devel. On macOS it can be installed with brew install libomp.

As clang version created on macOS do not have native openmp brew do not set libomp as default visible. If you install libomp with brew and want to build package from source you need to set OMP variable to libomp location.

For example:

export OMP="$(brew --prefix libomp)"
pip install .

As currently there is no wheel for macOS ARM64 it is required to build package from source.

Cite as

Bokota, G., Sroka, J., Basu, S. et al. PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies. BMC Bioinformatics 22, 72 (2021). https://doi.org/10.1186/s12859-021-03984-1

Project details

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  • License: BSD License (BSD-3-Clause)
  • Author: Grzegorz Bokota
  • Tags bioimaging
  • Requires: Python >=3.9
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Release history Release notifications | RSS feed

0.15.7

0.15.6

0.15.5

0.15.4

This version

0.15.3

0.15.2

0.15.1

0.15.0

0.14.0

0.13.11

0.12.0a5 pre-release

0.12.0a4 pre-release

0.12.0a3 pre-release

0.12.0a2 pre-release

0.12.0a0 pre-release

0.0.0

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