Automatic feature detection and quantification for in-vitro NETosis experiments plugin for PartSeg
Project description
Trapalyzer
Trapalyzer is a PartSeg and napari plugin for automatic feature detection and quantification for in-vitro NET release studies.
Installation
Trapalyzer is a plug-in for the PartSeg image processing. To use Trapalyzer,
you first need to install PartSeg.
If you use Windows, you can simply download and unpack the PartSeg.zip file -
no further installation needed. If you use Linux with a working Python
distribution, we recommend installing PartSeg by running
pip install PartSeg[all] in the command line.
After you have installed PartSeg, you can install Trapalyzer:
- On Windows, download the ZIP file with the plug-in (see the screenshot
below). Unpack the .zip archive and move the
Trapalyzerdirectory (located inTrapalyzer-master/srcin the unpacked archive) to thepluginsdirectory in the PartSeg folder. - On Linux, we recommend installing via
pip install Trapalyzer.
Usage examples
In the Tutorial directory you will find instructions on how to use Trapalyzer to analyze an example data set of fluorescence microscopy images.
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Source Distribution
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