Trapalyzer

Trapalyzer is a PartSeg and napari plugin for automatic feature detection and quantification for in-vitro NET release studies.

Installation

Trapalyzer is a plug-in for the PartSeg image processing. To use Trapalyzer, you first need to install PartSeg. If you use Windows, you can simply download and unpack the PartSeg.zip file - no further installation needed. If you use Linux with a working Python distribution, we recommend installing PartSeg by running pip install PartSeg[all] in the command line.

After you have installed PartSeg, you can install Trapalyzer:

• If you install PArtSeg from prebuild binaries (from zip) then you need to download this plugin from release page and unpack it to plugins directory in PartSeg folder.
• If you install PartSeg using pip or conda then you can install this plugin using pip pip install Trapalyzer

Usage examples

In the Tutorial directory you will find instructions on how to use Trapalyzer to analyze an example data set of fluorescence microscopy images.