A neighbour-joining library for Python.
Project description
anjl - A neighbour-joining library for Python
anjl is a Python package providing implementations of the
neighbour-joining
algorithm of Saitou
and Nei and some associated utilities.
Installation
pip install anjl
Usage
import anjl
Canonical neighbour-joining
help(anjl.canonical_nj)
About
There are implementations of neighbour-joining available in BioPython, scikit-bio and biotite, but they are relatively slow for larger numbers of nodes. I created this package to provide faster implementations for use in population genomics.
Bug reports and suggestions are welcome but I make no promises regarding support, please be patient and understanding!
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