A neighbour-joining library for Python.
Project description
anjl - A neighbour-joining library for Python :angel:
anjl is a Python package providing implementations of the
neighbour-joining
algorithm of Saitou
and Nei and some associated utilities.
Installation
pip install anjl
Usage
import anjl
Canonical neighbour-joining implementation
help(anjl.canonical_nj)
Plot a tree using the equal-angles layout
help(anjl.plot_equal_angles)
About
There are implementations of neighbour-joining available in BioPython, scikit-bio and biotite, but they are relatively slow for larger numbers of nodes. I created this package to provide faster implementations for use in population genomics.
Bug reports, suggestions and pull requests are welcome but I make no promises regarding support, please be patient and understanding! 🌻🌼🌸
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
anjl-0.4.0.tar.gz
(8.9 kB
view details)
Built Distribution
anjl-0.4.0-py3-none-any.whl
(9.9 kB
view details)
File details
Details for the file anjl-0.4.0.tar.gz.
File metadata
- Download URL: anjl-0.4.0.tar.gz
- Upload date:
- Size: 8.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/1.8.3 CPython/3.10.12 Linux/6.8.0-1014-azure
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | b2c454497a95f8eba0acc7fde4ef5f17d74aedcab825cb4af2172b8b88526750 |
|
| MD5 | 074e2a3d7810028eb6bdabcf111ef80a |
|
| BLAKE2b-256 | dffd2f8b9e20c4f242227ca20565ef95f602d03afbc1ddc006c6abbc729fdcaa |
File details
Details for the file anjl-0.4.0-py3-none-any.whl.
File metadata
- Download URL: anjl-0.4.0-py3-none-any.whl
- Upload date:
- Size: 9.9 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/1.8.3 CPython/3.10.12 Linux/6.8.0-1014-azure
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | b050c5fa6f17d560712fcff21121cdefcb96eda4ead8a20c2373a02ea1d1c86d |
|
| MD5 | 0c721bfa075ab4f4b48160107791f461 |
|
| BLAKE2b-256 | 79781de2f1d7a254c7f2abad62b67cefed5c1f416481015e50fda171e8247b3a |
