A neighbour-joining library for Python.
Project description
anjl - A neighbour-joining library for Python :angel:
anjl is a Python package providing implementations of the
neighbour-joining
algorithm of Saitou
and Nei and some associated utilities.
Installation
pip install anjl
Usage
import anjl
Canonical neighbour-joining implementation
help(anjl.canonical_nj)
Rapid neighbour-joining implementation
help(anjl.rapid_nj)
Plot a tree using the equal-angles layout
help(anjl.plot_equal_angles)
About
There are implementations of neighbour-joining available in BioPython, scikit-bio and biotite, but they are relatively slow for larger numbers of nodes. I created this package to provide faster implementations for use in population genomics.
Bug reports, suggestions and pull requests are welcome but I make no promises regarding support, please be patient and understanding! 🌻🌼🌸
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