Annotated data.

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Project links

Project description

anndata - Annotated data

anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.

Discuss development on GitHub.
Read the documentation.
Ask questions on the scverse Discourse.
Install via pip install anndata or conda install anndata -c conda-forge.
See Scanpy's documentation for usage related to single cell data. anndata was initially built for Scanpy.

anndata is part of the scverse project (website, governance) and is fiscally sponsored by NumFOCUS. Please consider making a tax-deductible donation to help the project pay for developer time, professional services, travel, workshops, and a variety of other needs.

Citation

If you use anndata in your work, please cite the anndata pre-print as follows:

anndata: Annotated data

Isaac Virshup, Sergei Rybakov, Fabian J. Theis, Philipp Angerer, F. Alexander Wolf

bioRxiv 2021 Dec 19. doi: 10.1101/2021.12.16.473007.

You can cite the scverse publication as follows:

The scverse project provides a computational ecosystem for single-cell omics data analysis

Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, Scverse Community, Bonnie Berger, Dana Pe’er, Aviv Regev, Sarah A. Teichmann, Francesca Finotello, F. Alexander Wolf, Nir Yosef, Oliver Stegle & Fabian J. Theis

Nat Biotechnol. 2023 Apr 10. doi: 10.1038/s41587-023-01733-8.

Project details

These details have not been verified by PyPI

Project links

Release history Release notifications | RSS feed

0.11.1

Nov 12, 2024

0.11.0

Nov 7, 2024

0.11.0rc3 pre-release

Oct 14, 2024

0.11.0rc2 pre-release

Sep 24, 2024

0.11.0rc1 pre-release

Sep 4, 2024

0.10.9

Aug 28, 2024

0.10.8

Jun 20, 2024

0.10.7

Apr 9, 2024

0.10.6

Mar 11, 2024

0.10.5.post1

Jan 26, 2024

This version

0.10.5

Jan 26, 2024

0.10.4

Jan 4, 2024

0.10.3

Oct 31, 2023

0.10.2

Oct 11, 2023

0.10.1

Oct 8, 2023

0.10.0

Oct 6, 2023

0.10.0rc1 pre-release

Sep 9, 2023

0.9.2

Jul 25, 2023

0.9.1

Apr 12, 2023

0.9.0

Apr 11, 2023

0.9.0rc1 pre-release

Feb 21, 2023

0.8.0

Mar 15, 2022

0.8.0rc1 pre-release

Jan 24, 2022

0.7.8

Nov 9, 2021

0.7.7

Nov 9, 2021

0.7.6

Apr 11, 2021

0.7.5

Nov 12, 2020

0.7.4

Jul 9, 2020

0.7.3

May 20, 2020

0.7.2

May 19, 2020

0.7.2a1 pre-release

May 18, 2020

0.7.1

Jan 22, 2020

0.7

Jan 22, 2020

0.7rc2 pre-release

Jan 7, 2020

0.7rc1 pre-release

Dec 23, 2019

0.6.22.post1

Jul 8, 2019

0.6.22

Jul 6, 2019

0.6.22rc1 pre-release

Jun 19, 2019

0.6.21

Jun 6, 2019

0.6.20

May 21, 2019

0.6.19

Mar 24, 2019

0.6.18

Jan 29, 2019

0.6.17

Jan 12, 2019

0.6.16

Dec 16, 2018

0.6.15

Dec 12, 2018

0.6.14

Dec 10, 2018

0.6.13

Nov 4, 2018

0.6.12

Oct 29, 2018

0.6.11

Oct 8, 2018

0.6.10

Sep 3, 2018

0.6.9

Aug 20, 2018

0.6.8

Aug 13, 2018

0.6.7

Aug 13, 2018

0.6.6

Jul 23, 2018

0.6.5

Jul 3, 2018

0.6.4

May 25, 2018

0.6.3

May 25, 2018

0.6.2

May 25, 2018

0.6.1

May 15, 2018

0.6

May 1, 2018

0.5.10.post2

Apr 26, 2018

0.5.10.post1

Apr 26, 2018

0.5.10

Apr 17, 2018

0.5.9

Apr 16, 2018

0.5.8.post1

Apr 16, 2018

0.5.8

Mar 29, 2018

0.5.7

Mar 20, 2018

0.5.6

Mar 19, 2018

0.5.5

Mar 5, 2018

0.5.4

Feb 26, 2018

0.5.3

Feb 17, 2018

0.5.2

Feb 15, 2018

0.5.1

Feb 9, 2018

0.5

Feb 9, 2018

0.4.4

Jan 6, 2018

0.4.3

Jan 3, 2018

0.4.2

Dec 29, 2017

0.4.1

Dec 28, 2017

0.4

Dec 24, 2017

0.3.4

Nov 29, 2017

0.3.3

Nov 28, 2017

0.3.2

Nov 28, 2017

0.3.1

Nov 17, 2017

0.3.0.3

Nov 15, 2017

0.3.0.2

Nov 14, 2017

0.3.0.1

Nov 14, 2017

0.3

Nov 14, 2017

0.2.1

Nov 10, 2017

0.2

Nov 10, 2017

0.1

Nov 7, 2017

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