An annotated data matrix.
Project description
AnnData
An AnnData object adata stores a data matrix (adata.data), dataframe-like sample (adata.smp) and variable (adata.var) annotation and unstructured dict-like annotation (adata.uns).
Read the documentation.
You can install anndata independently of Scanpy from PyPI: pip install anndata.
We will slowly support all of AnnData’s generic functions (plotting, preprocessing, reading, writing from disk, hdf5 backing on disk) via the anndata package.
AnnData has been developed within Scanpy. We are grateful if you consider citing our preprint on Scanpy and AnnData.
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