Annotated data.
Project description
anndata - Annotated data
anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.
Discuss development on GitHub.
Read the documentation.
Ask questions on the scverse Discourse.
Install via pip install anndata or conda install anndata -c conda-forge.
Consider citing the anndata paper.
See Scanpy’s documentation for usage related to single cell data. anndata was initially built for Scanpy.
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