WebApollo API library
Project description
Apollo is a Python library for interacting with WebApollo
Examples
from apollo import WebApolloInstance
wa = WebApolloInstance('https://fqdn/apollo', 'jane.doe@fqdn.edu', 'password')
orgs = wa.organisms.add_organism(
"Yeast",
"/path/to/jbrowse/data",
genus='Saccharomyces',
species='cerevisiae',
public=False
)
# Give webapollo a second to process the uploaded organism.
time.sleep(1)
# Then add yourself to permission list
data = wa.users.update_organism_permissions(
"jane.doe@fqdn.edu",
"Yeast",
write=True,
export=True,
read=True,
)Or with the new Arrow client:
$ arrow groups create_group university
{
"publicGroup": false,
"class": "org.bbop.apollo.UserGroup",
"name": "university",
"users": null,
"id": 558319
}
# THEN
$ arrow users get_users | \
jq '.[] | select(.username | contains("@tamu.edu")) | .username' | \
xargs -n1 arrow users add_to_group university
# OR
$ arrow users get_users | \
jq '.[] | select(.username | contains("@tamu.edu")) | .username' | \
paste -s -d',' | \
xargs arrow group update_membership 558319 --usersHistory
- 3.0.2
Patch a bug discovered in io.write, thanks Morgan!
- 3.0
“Arrow” CLI utility
More pythonic API and many workarounds for Apollo bugs or oddities
Complete package restructure
Nearly all functions renamed
- 2.0
Galaxy Functions
TTL Cache to work around Galaxy’s behaviour
Status and Canned* Clients from [@abretaud](https://github.com/abretaud)
- 1.0
Initial release
License
Available under the MIT License
Support
This material is based upon work supported by the National Science Foundation under Grant Number (Award 1565146)
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distributions
File details
Details for the file apollo-3.0.2.tar.gz.
File metadata
- Download URL: apollo-3.0.2.tar.gz
- Upload date:
- Size: 25.6 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 8d6a2ca3779dbb5262e3f07fcbc28dac378f73740380fdf65276a7a00ffaeef1 |
|
| MD5 | 16a0352833c5ce418cf129ff03ac6ac3 |
|
| BLAKE2b-256 | 07d5e4428246df6033ee05d9f30fbc70fdb94ba76d2843eafccff7f65785197a |
File details
Details for the file apollo-3.0.2-py3.5.egg.
File metadata
- Download URL: apollo-3.0.2-py3.5.egg
- Upload date:
- Size: 163.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 9182a960adf3cbaf07988efa6e0777eeb0ce223dc74ff08c036acb8552b6bf38 |
|
| MD5 | 7f1be8a69386dc312b5363a0c29e1d10 |
|
| BLAKE2b-256 | c8421f1eb6e6f367ae911028633389a3086c1162f6a8d4772e5bb6e7f9b268fc |
File details
Details for the file apollo-3.0.2-py2.7.egg.
File metadata
- Download URL: apollo-3.0.2-py2.7.egg
- Upload date:
- Size: 157.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 24d525a516b8faa5eae5b35a047a0c9421558e43c868e44bf24eb22fcff59050 |
|
| MD5 | d0815e389a56d698f48f33c48796bc76 |
|
| BLAKE2b-256 | 5b6105a7523806153ecda07d484e681b77f01b813d0af4409e6216a9ebf97c78 |
