Analizer of periodic repetitions in DNA
Project description
Use aprdna to look for periodic repetitions in sequences of DNA, in the GenBank format.
Install
Use pip to install the program:
$ pip install aprdnaUsage
usage: aprdna [-h] [-a NAME] [-p PERIOD] [-t TOLERANCE] [-m LENGTH] [-r THROTTLE] path
Search for repetitions of nucleotides.
- positional arguments:
path Path to Sequence file
- optional arguments:
- -h, --help
show help message and exit
- -p PERIOD, --period PERIOD
Periodicity of the repetition
- -t TOLERANCE, --tolerance TOLERANCE
Tolerance window for the repetition
- -m LENGTH, --length LENGTH
Minimal repetition length
- -r THROTTLE, --throttle THROTTLE
Stop after so many fragments
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