Utilities working with blocked gzip streams.
Project description
bgzip: block gzip streams
bgzip provides streams for block gzip files.
Cython is used under the hood to bypass Python's GIL and provide fast, parallelized inflation/deflation.
with open("my_bgzipped_file.gz", "rb") as raw:
with bgzip.BGZipReader(raw) as fh:
data = fh.read(number_of_bytes)
with open("my_bgzipped_file.gz", "wb") as raw:
with bgzip.BGZipWriter(raw) as fh:
fh.write(my_data)
Installation
pip install bgzip
Requirements
bgzip requires openmp. On MacOS it can be installed with:
brew install llvm
Links
Project home page GitHub
Package distribution PyPI
Bugs
Please report bugs, issues, feature requests, etc. on GitHub.
Release history Release notifications | RSS feed
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