Skip to main content

A package for parsing and storing Entrez Gene

Project description

This package downloads, parses, and stores the Entrez Gene and HomoloGene databases then provides utilities for converting to BEL.

Installation Current version on PyPI Stable Supported Python Versions MIT License

bio2bel_entrez can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_entrez

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/entrez.git@master

Setup

Entrez can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_entrez
>>> entrez_manager = bio2bel_entrez.Manager()
>>> entrez_manager.populate()

Command Line Utility

bio2bel_entrez populate

Citations

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

bio2bel_entrez-0.2.2.tar.gz (18.9 kB view details)

Uploaded Source

Built Distribution

bio2bel_entrez-0.2.2-py3-none-any.whl (15.5 kB view details)

Uploaded Python 3

File details

Details for the file bio2bel_entrez-0.2.2.tar.gz.

File metadata

  • Download URL: bio2bel_entrez-0.2.2.tar.gz
  • Upload date:
  • Size: 18.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/2.0.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.2.0 requests-toolbelt/0.9.1 tqdm/4.36.1 CPython/3.7.4

File hashes

Hashes for bio2bel_entrez-0.2.2.tar.gz
Algorithm Hash digest
SHA256 fc1f7a95cf879b238d7036619c59cdc9462a748287e200cc86d41fdc7e650f2e
MD5 0dd600ba42607c9b1a5348da0290d753
BLAKE2b-256 b6bca2d451d35df1212456673c1917f4a9aa1600cd34ffe955265a0ed6d8b28f

See more details on using hashes here.

Provenance

File details

Details for the file bio2bel_entrez-0.2.2-py3-none-any.whl.

File metadata

  • Download URL: bio2bel_entrez-0.2.2-py3-none-any.whl
  • Upload date:
  • Size: 15.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/2.0.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.2.0 requests-toolbelt/0.9.1 tqdm/4.36.1 CPython/3.7.4

File hashes

Hashes for bio2bel_entrez-0.2.2-py3-none-any.whl
Algorithm Hash digest
SHA256 20c36e7804c6b98f79fedf51ddaf207899148bfd4de31ea82fc1eee9ad4829ea
MD5 5ab1f5fc04d2beaf399d07b4c0ac529f
BLAKE2b-256 c4f0be84fdf4e85aed343fd0920ff332527617b1e6421ac00601901a985ca57b

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page