bio2bel-entrez

A package for parsing and storing Entrez Gene

These details have not been verified by PyPI

Project links

Homepage

Development Status
- 4 - Beta
Environment
- Console
Intended Audience
- Developers
- Science/Research
License
- OSI Approved :: MIT License
Operating System
- OS Independent
Programming Language
- Python
- Python :: 3.6
Topic
- Scientific/Engineering :: Bio-Informatics

Project description

This package downloads, parses, and stores the Entrez Gene and HomoloGene databases then provides utilities for converting to BEL.

Installation

bio2bel_entrez can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_entrez

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/entrez.git@master

Setup

Entrez can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_entrez
>>> entrez_manager = bio2bel_entrez.Manager()
>>> entrez_manager.populate()

Command Line Utility

bio2bel_entrez populate

Citations

Maglott, D., et al. (2011). Entrez Gene: gene-centered information at NCBI. Nucleic Acids Research, 39(Database issue), D52–D57.

Project details

These details have not been verified by PyPI

Project links

Homepage

Development Status
- 4 - Beta
Environment
- Console
Intended Audience
- Developers
- Science/Research
License
- OSI Approved :: MIT License
Operating System
- OS Independent
Programming Language
- Python
- Python :: 3.6
Topic
- Scientific/Engineering :: Bio-Informatics

Release history Release notifications | RSS feed

0.2.2

Sep 26, 2019

0.2.2.dev0 pre-release

Sep 26, 2019

0.2.1

Apr 15, 2019

0.2.1.dev0 pre-release

Apr 15, 2019

0.2.0

Nov 13, 2018

0.2.0.dev0 pre-release

Nov 13, 2018

0.1.1

Aug 2, 2018

0.1.1.dev0 pre-release

Aug 2, 2018

This version

0.1.0

Aug 1, 2018

0.1.0.dev0 pre-release

Aug 1, 2018

0.0.1

May 21, 2018

0.0.1.dev0 pre-release

May 21, 2018

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

bio2bel_entrez-0.1.0.tar.gz (15.9 kB view details)

Uploaded Aug 1, 2018 Source

Built Distribution

bio2bel_entrez-0.1.0-py3-none-any.whl (11.6 kB view details)

Uploaded Aug 1, 2018 Python 3

File details

Details for the file bio2bel_entrez-0.1.0.tar.gz.

File metadata

Download URL: bio2bel_entrez-0.1.0.tar.gz
Upload date: Aug 1, 2018
Size: 15.9 kB
Tags: Source
Uploaded using Trusted Publishing? No
Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.24.0 CPython/3.7.0

File hashes

Hashes for bio2bel_entrez-0.1.0.tar.gz
Algorithm	Hash digest
SHA256	`3d4ef832e4e65e298c33b376a46035fc84068cf14386cb8404487db6aee6b4a0`
MD5	`1c9a14ebb746cdb8dbdbf7e761819e0e`
BLAKE2b-256	`6980d8c20f59bc37f3ec91d4fe50d26d534a69cc4e505ff678361aac4339deae`

See more details on using hashes here.

Provenance

File details

Details for the file bio2bel_entrez-0.1.0-py3-none-any.whl.

File metadata

Download URL: bio2bel_entrez-0.1.0-py3-none-any.whl
Upload date: Aug 1, 2018
Size: 11.6 kB
Tags: Python 3
Uploaded using Trusted Publishing? No
Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.24.0 CPython/3.7.0

File hashes

Hashes for bio2bel_entrez-0.1.0-py3-none-any.whl
Algorithm	Hash digest
SHA256	`fea5d4b19d0924307321a41bd7584d800a9d5c296a78b16582dd3255f99bfadc`
MD5	`9dcf69aca6e40b1e8f92b6c0114fe5d3`
BLAKE2b-256	`199c1c21b56fccca7789658fd78c811a126e3a84b72506066959527ddb93a223`