bio2bel-hgnc

A package for converting HGNC to BEL

Project description

This package creates:

HGNC BEL namespace
HGNC gene families BEL namespace,
HGNC gene family membership BEL Script
orthology BEL script

Citation

Gray KA, Yates B, Seal RL, Wright MW, Bruford EA. genenames.org: the HGNC resources in 2015. Nucleic Acids Res. 2015 Jan;43(Database issue):D1079-85. doi: 10.1093/nar/gku1071. http://www.ncbi.nlm.nih.gov/pubmed/25361968

Abstract

The HUGO Gene Nomenclature Committee (HGNC) based at the European Bioinformatics Institute (EMBL-EBI) assigns unique symbols and names to human genes. To date the HGNC have assigned over 39,000 gene names and, representing an increase of over 5000 entries in the past two years. As well as increasing the size of our database, we have continued redesigning our website http://www.genenames.org and have modified, updated and improved many aspects of the site including a faster and more powerful search, a vastly improved HCOP tool and a REST service to increase the number of ways users can retrieve our data. This article provides an overview of our current online data and resources, and highlights the changes we have made in recent years.

Installation

pip3 install git+https://github.com/bio2bel/hgnc.git

Acknowledgements

This package heavily relies on Andrej Konotopez’s package PyHGNC

Project details

Release history Release notifications | RSS feed

0.3.0

Nov 23, 2019

0.2.4

Sep 26, 2019

0.2.3

Apr 15, 2019

0.2.2

Jan 14, 2019

0.2.1

Nov 22, 2018

0.2.0

Nov 13, 2018

0.1.2

Oct 11, 2018

0.1.1

Sep 13, 2018

0.1.0

Jul 30, 2018

0.1.0.dev0 pre-release

Jul 30, 2018

0.0.8

Jun 1, 2018

0.0.8.dev0 pre-release

Jun 1, 2018

0.0.7

May 15, 2018

0.0.6

May 9, 2018

0.0.6.dev0 pre-release

May 9, 2018

0.0.5

Apr 25, 2018

0.0.4

Jan 30, 2018

0.0.3

Jan 26, 2018

This version

0.0.2

Jan 26, 2018

0.0.1

Jan 25, 2018

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

bio2bel_hgnc-0.0.2.tar.gz (25.5 kB view details)

Uploaded Jan 26, 2018 Source

Built Distribution

bio2bel_hgnc-0.0.2-py3-none-any.whl (15.3 kB view details)

Uploaded Jan 26, 2018 Python 3

File details

Details for the file bio2bel_hgnc-0.0.2.tar.gz.

File metadata

Download URL: bio2bel_hgnc-0.0.2.tar.gz
Upload date: Jan 26, 2018
Size: 25.5 kB
Tags: Source
Uploaded using Trusted Publishing? No

File hashes

Hashes for bio2bel_hgnc-0.0.2.tar.gz
Algorithm	Hash digest
SHA256	`735b7ab0d7292d4325d89577bda0cec7824ec0f0daddbfa146cc367f9c8ca2e9`
MD5	`36bd9bc4ec4b573173569d81184b7f5b`
BLAKE2b-256	`9961f1efa18f4f2fc0e0c28aab18c59006cf0cd8ec4a4f6ad72c9bff0d6596fe`

See more details on using hashes here.

Provenance

File details

Details for the file bio2bel_hgnc-0.0.2-py3-none-any.whl.

File metadata

Download URL: bio2bel_hgnc-0.0.2-py3-none-any.whl
Upload date: Jan 26, 2018
Size: 15.3 kB
Tags: Python 3
Uploaded using Trusted Publishing? No

File hashes

Hashes for bio2bel_hgnc-0.0.2-py3-none-any.whl
Algorithm	Hash digest
SHA256	`734090c8da4c8d7d1a23e7b293d9e1f383c3f2a22de67b458ab8a3b2803c108e`
MD5	`1e25ea6a812307e5c40b3c2d6d12c1f5`
BLAKE2b-256	`3f64b6e6f88fee46d89e7583e4110ec6c90bc19900801a21165b8eb83c6bc62c`