bio2bel-hgnc

A package for converting HGNC to BEL

Project description

This package creates:

HGNC BEL namespace
HGNC gene families BEL namespace,
HGNC gene family membership BEL Script
orthology BEL script

Installation

bio2bel_hgnc can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_hgnc

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/hgnc.git@master

Setup

HGNC can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_hgnc
>>> hgnc_manager = bio2bel_hgnc.Manager()
>>> hgnc_manager.populate()

Command Line Utility

bio2bel_hgnc populate

Citations

Gray KA, et al. genenames.org: the HGNC resources in 2015. Nucleic Acids Res. 2015 Jan;43(Database issue):D1079-85

Acknowledgements

This package heavily relies on Andrej Konotopez’s package PyHGNC

Project details

Release history Release notifications | RSS feed

0.3.0

Nov 23, 2019

0.2.4

Sep 26, 2019

0.2.3

Apr 15, 2019

0.2.2

Jan 14, 2019

0.2.1

Nov 22, 2018

0.2.0

Nov 13, 2018

0.1.2

Oct 11, 2018

0.1.1

Sep 13, 2018

0.1.0

Jul 30, 2018

0.1.0.dev0 pre-release

Jul 30, 2018

0.0.8

Jun 1, 2018

0.0.8.dev0 pre-release

Jun 1, 2018

0.0.7

May 15, 2018

0.0.6

May 9, 2018

This version

0.0.6.dev0 pre-release

May 9, 2018

0.0.5

Apr 25, 2018

0.0.4

Jan 30, 2018

0.0.3

Jan 26, 2018

0.0.2

Jan 26, 2018

0.0.1

Jan 25, 2018

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

bio2bel_hgnc-0.0.6.dev0.tar.gz (25.9 kB view details)

Uploaded May 9, 2018 Source

Built Distribution

bio2bel_hgnc-0.0.6.dev0-py3-none-any.whl (16.7 kB view details)

Uploaded May 9, 2018 Python 3

File details

Details for the file bio2bel_hgnc-0.0.6.dev0.tar.gz.

File metadata

Download URL: bio2bel_hgnc-0.0.6.dev0.tar.gz
Upload date: May 9, 2018
Size: 25.9 kB
Tags: Source
Uploaded using Trusted Publishing? No

File hashes

Hashes for bio2bel_hgnc-0.0.6.dev0.tar.gz
Algorithm	Hash digest
SHA256	`68de962e234518784b8bf1141ed7d36bbb51dff09a95ec994d91be33b3353399`
MD5	`587b65be90441dd741d62f71e39a6555`
BLAKE2b-256	`706cbea4e9dd25c4d6f87ef78ff056f6b4a15ad7c1118eb68a277df6157f44c2`

See more details on using hashes here.

Provenance

File details

Details for the file bio2bel_hgnc-0.0.6.dev0-py3-none-any.whl.

File metadata

Download URL: bio2bel_hgnc-0.0.6.dev0-py3-none-any.whl
Upload date: May 9, 2018
Size: 16.7 kB
Tags: Python 3
Uploaded using Trusted Publishing? No

File hashes

Hashes for bio2bel_hgnc-0.0.6.dev0-py3-none-any.whl
Algorithm	Hash digest
SHA256	`2f07b2eb7be4edae671dbd45c4646be52c01b9e7e9eb3493b4e6b0b44e1e6481`
MD5	`7d8982f7addc29b76779e4b812a09cad`
BLAKE2b-256	`91f85370bb9e9aba25a81b8500c3f7ea52c6e9bafd8456823333cbdb85b3b284`