A package for converting HGNC to BEL
Project description
This package creates:
HGNC BEL namespace
HGNC gene families BEL namespace,
HGNC gene family membership BEL Script
orthology BEL script
Installation
bio2bel_hgnc can be installed easily from PyPI with the following code in your favorite terminal:
$ python3 -m pip install bio2bel_hgnc
or from the latest code on GitHub with:
$ python3 -m pip install git+https://github.com/bio2bel/hgnc.git@master
Setup
HGNC can be downloaded and populated from either the Python REPL or the automatically installed command line utility.
Python REPL
>>> import bio2bel_hgnc
>>> hgnc_manager = bio2bel_hgnc.Manager()
>>> hgnc_manager.populate()
Command Line Utility
bio2bel_hgnc populate
Citations
Gray KA, et al. genenames.org: the HGNC resources in 2015. Nucleic Acids Res. 2015 Jan;43(Database issue):D1079-85
Acknowledgements
This package heavily relies on Andrej Konotopez’s package PyHGNC
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bio2bel_hgnc-0.1.1.tar.gz
(26.4 kB
view hashes)
Built Distribution
Close
Hashes for bio2bel_hgnc-0.1.1-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 8ea54ffe51b987ddddbaa29411690ef5aacda4a747e29ca151569cc39081485a |
|
MD5 | d7b2b06b18f9e38ce84b3bc92d85a313 |
|
BLAKE2b-256 | 48a8f51a71f28d88e846105dc9773c8909d5ce80ffb9473002fc4ff7d45c4b7d |