bio2bel-hgnc

A package for converting HGNC to BEL

These details have not been verified by PyPI

Project links

Homepage

Development Status
- 4 - Beta
Environment
- Console
Intended Audience
- Developers
- Science/Research
License
- OSI Approved :: MIT License
Operating System
- OS Independent
Programming Language
Topic
- Scientific/Engineering :: Bio-Informatics

Project description

This package creates:

HGNC BEL namespace
HGNC gene families BEL namespace,
HGNC gene family membership BEL Script
orthology BEL script

Installation

bio2bel_hgnc can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_hgnc

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/hgnc.git@master

Setup

HGNC can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_hgnc
>>> hgnc_manager = bio2bel_hgnc.Manager()
>>> hgnc_manager.populate()

Command Line Utility

bio2bel_hgnc populate

Citations

Gray KA, et al. genenames.org: the HGNC resources in 2015. Nucleic Acids Res. 2015 Jan;43(Database issue):D1079-85

Acknowledgements

This package heavily relies on Andrej Konotopez’s package PyHGNC

Project details

These details have not been verified by PyPI

Project links

Homepage

Development Status
- 4 - Beta
Environment
- Console
Intended Audience
- Developers
- Science/Research
License
- OSI Approved :: MIT License
Operating System
- OS Independent
Programming Language
Topic
- Scientific/Engineering :: Bio-Informatics

Release history Release notifications | RSS feed

0.3.0

Nov 23, 2019

0.2.4

Sep 26, 2019

0.2.3

Apr 15, 2019

0.2.2

Jan 14, 2019

0.2.1

Nov 22, 2018

0.2.0

Nov 13, 2018

0.1.2

Oct 11, 2018

This version

0.1.1

Sep 13, 2018

0.1.0

Jul 30, 2018

0.1.0.dev0 pre-release

Jul 30, 2018

0.0.8

Jun 1, 2018

0.0.8.dev0 pre-release

Jun 1, 2018

0.0.7

May 15, 2018

0.0.6

May 9, 2018

0.0.6.dev0 pre-release

May 9, 2018

0.0.5

Apr 25, 2018

0.0.4

Jan 30, 2018

0.0.3

Jan 26, 2018

0.0.2

Jan 26, 2018

0.0.1

Jan 25, 2018

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