A package for converting HGNC to BEL
Project description
This package creates:
HGNC BEL namespace
HGNC gene families BEL namespace,
HGNC gene family membership BEL Script
orthology BEL script
Installation 
bio2bel_hgnc can be installed easily from PyPI with the following code in your favorite terminal:
$ python3 -m pip install bio2bel_hgncor from the latest code on GitHub with:
$ python3 -m pip install git+https://github.com/bio2bel/hgnc.git@masterSetup
HGNC can be downloaded and populated from either the Python REPL or the automatically installed command line utility.
Python REPL
>>> import bio2bel_hgnc
>>> hgnc_manager = bio2bel_hgnc.Manager()
>>> hgnc_manager.populate()Command Line Utility
bio2bel_hgnc populateCitations
Gray KA, et al. genenames.org: the HGNC resources in 2015. Nucleic Acids Res. 2015 Jan;43(Database issue):D1079-85
Acknowledgements
This package heavily relies on Andrej Konotopez’s package PyHGNC
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file bio2bel_hgnc-0.2.4.tar.gz.
File metadata
- Download URL: bio2bel_hgnc-0.2.4.tar.gz
- Upload date:
- Size: 27.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/2.0.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.2.0 requests-toolbelt/0.9.1 tqdm/4.36.1 CPython/3.7.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 1c93f10e377dd59563fb77d6ba6bfe1e4cd827ec8bcbaa6e9a398b52a2c48cf7 |
|
| MD5 | 2eba091e2dedb8385a9830484cdfdcda |
|
| BLAKE2b-256 | e0fd666832bc1d035ff5c49af6132db1773b2cd8ef1aa680b8d4ed3840e9650d |
Provenance
File details
Details for the file bio2bel_hgnc-0.2.4-py3-none-any.whl.
File metadata
- Download URL: bio2bel_hgnc-0.2.4-py3-none-any.whl
- Upload date:
- Size: 14.8 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/2.0.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.2.0 requests-toolbelt/0.9.1 tqdm/4.36.1 CPython/3.7.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | da7de214aba3c7bae2940b1fd1e049ffc2d16df0dfa3134d1b9626143ff97c06 |
|
| MD5 | 4e77daa86ebdd19ee2adfeb34966d3d7 |
|
| BLAKE2b-256 | 80119520a326018b987fcf3ee951a31831ed9202a84704a40d64cdf50d5c8148 |
