bio2bel-kegg

A wraper around the KEGG RESTful API

Project description

This package allows the enrichment of BEL networks with KEGG information by wrapping its RESTful API. Furthermore, it is integrated in the ComPath environment for pathway database comparison.

Installation

This code can be installed with pip3 install git+https://github.com/bio2bel/kegg.git

Functionalities and Commands

Following, the main functionalities and commands to work with this package:

Populate local database with KEGG info python3 -m bio2bel_kegg populate
Run an admin site for simple querying and exploration python3 -m bio2bel_kegg web (http://localhost:5000/admin/)
Export gene sets for programmatic use python3 -m bio2bel_kegg export

Citation

Kanehisa, Furumichi, M., Tanabe, M., Sato, Y., and Morishima, K.; KEGG: new perspectives on genomes, pathways, diseases and drugs. Nucleic Acids Res. 45, D353-D361 (2017).
Kanehisa, M., Sato, Y., Kawashima, M., Furumichi, M., and Tanabe, M.; KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res. 44, D457-D462 (2016).
Kanehisa, M. and Goto, S.; KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 27-30 (2000).

Project details

Release history Release notifications | RSS feed

0.3.0

Nov 18, 2020

0.2.5

Jul 1, 2019

0.2.4

Feb 28, 2019

0.2.3

Jan 14, 2019

0.2.2

Jan 11, 2019

0.2.1

Nov 13, 2018

0.2.0

Nov 13, 2018

0.1.2

Oct 3, 2018

0.1.1

Oct 3, 2018

0.1.0

Aug 13, 2018

0.0.10

Jul 26, 2018

0.0.9

Jun 1, 2018

0.0.9.dev0 pre-release

Jun 1, 2018

0.0.8

Jun 1, 2018

0.0.8.dev0 pre-release

Jun 1, 2018

0.0.7

Jun 1, 2018

0.0.7.dev0 pre-release

Jun 1, 2018

0.0.6

Apr 24, 2018

This version

0.0.5

Apr 18, 2018

0.0.4

Mar 23, 2018

0.0.3

Mar 2, 2018

0.0.2

Jan 26, 2018

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