bio2bel-mirtarbase

A package for converting miRTarBase to BEL

These details have not been verified by PyPI

Project links

Homepage

Development Status
- 4 - Beta
Environment
- Console
Intended Audience
- Developers
- Science/Research
License
- OSI Approved :: MIT License
Operating System
- OS Independent
Programming Language
- Python
- Python :: 3.6
Topic
- Scientific/Engineering :: Bio-Informatics

Project description

Serializes text-mined miRNA-target interactions to BEL

Installation

bio2bel_mirtarbase can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_mirtarbase

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/mirtarbase.git@master

Setup

miRTarBase can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_mirtarbase
>>> mirtarbase_manager = bio2bel_mirtarbase.Manager()
>>> mirtarbase_manager.populate()

Command Line Utility

bio2bel_mirtarbase populate

Citations

Chih-Hung Chou, et al; miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database. Nucleic Acids Res 2016; 44 (D1): D239-D247. doi: 10.1093/nar/gkv1258

Project details

These details have not been verified by PyPI

Project links

Homepage

Development Status
- 4 - Beta
Environment
- Console
Intended Audience
- Developers
- Science/Research
License
- OSI Approved :: MIT License
Operating System
- OS Independent
Programming Language
- Python
- Python :: 3.6
Topic
- Scientific/Engineering :: Bio-Informatics

Release history Release notifications | RSS feed

0.2.2

Apr 16, 2019

0.2.1

Apr 16, 2019

0.2.0

Dec 3, 2018

This version

0.1.2

May 8, 2018

0.1.1

Nov 27, 2017

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Uploaded May 8, 2018 Python 3

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Tags: Python 3
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