A package for converting biological stuff to BEL
Project description
Bio2BEL
Bio2BEL is a project aimed at bringing biological databases in a wide variety of schemata into the unified framework of Biological Expression Language.
This package provides a command line interface through which other bio2bel packages can be linked.
Project Structure
All Bio2BEL projects should have a similar structure. In the top level, there should be certain modules:
manager.py should include a class called Manager that has a function Manager.populate()
cli.py should have a main click group called main and optionally have commands for populate, drop, deploy, and web
How to Register
Bio2BEL uses the entry points loader to find packages in combination with setuptools’s entry_points argument.
import setuptools
setuptools.setup(
...
entry_points={
'bio2bel': [
'chembl = bio2bel_chembl',
],
'console_scripts': [
'bio2bel_chembl = bio2bel_chembl.cli:main',
]
}
...
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