Skip to main content

CloudMan and Galaxy API library

Project description

BioBlend is a Python (2.6 or 2.7) library for interacting with CloudMan and Galaxy’s API.

Conceptually, it makes it possible to script and automate the process of cloud infrastructure provisioning and scaling via CloudMan, and running of analyses via Galaxy. In reality, it makes it possible to do things like this:

  • Create a CloudMan compute cluster, via an API and directly from your local machine:

    from bioblend.cloudman import CloudManConfig
    from bioblend.cloudman import CloudManInstance
    cfg = CloudManConfig('<your cloud access key>', '<your cloud secret key>', 'My CloudMan',  'ami-<ID>', 'm1.small', '<password>')
    cmi = CloudManInstance.launch_instance(cfg)
    cmi.get_status()
  • Reconnect to an existing CloudMan instance and manipulate it:

    from bioblend.cloudman import CloudManInstance
    cmi = CloudManInstance("<instance IP>", "<password>")
    cmi.add_nodes(3)
    cluster_status = cmi.get_status()
    cmi.remove_nodes(2)
  • Interact with Galaxy via a straightforward API:

    from bioblend.galaxy import GalaxyInstance
    gi = GalaxyInstance('<Galaxy IP>', key='your API key')
    libs = gi.libraries.get_libraries()
    gi.workflows.show_workflow('workflow ID')
    gi.workflows.run_workflow('workflow ID', input_dataset_map)

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

bioblend-0.4.1.tar.gz (363.7 kB view details)

Uploaded Source

File details

Details for the file bioblend-0.4.1.tar.gz.

File metadata

  • Download URL: bioblend-0.4.1.tar.gz
  • Upload date:
  • Size: 363.7 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No

File hashes

Hashes for bioblend-0.4.1.tar.gz
Algorithm Hash digest
SHA256 64a4a04d832f8dc98911002ce82beb4903a27e8204903a76ec99e127cad6618f
MD5 76a03399497c9f058c8f35d9f3f5e708
BLAKE2b-256 6758e58c01e5c62d673ec6ef8d3560da76be77c5119d60b69a88085902835998

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page