BioKEEN (KnowlEdge EmbeddiNgs) is a package for training and evaluating biological knowledge graph embeddings

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  • License: MIT License (MIT)
  • Author: Mehdi Ali
  • Maintainer: Mehdi Ali
  • Tags KEEN, knowledge embedding
  • Requires: Python >=3.6
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Project description

BioKEEN is a package for training and evaluating biological knowledge graph embeddings built on PyKEEN.

Currently, the framework is under heavy development.

Installation

  1. BioKEEN can be installed with the following commands:

python3 -m pip install git+https://github.com/SmartDataAnalytics/BioKEEN.git@master

  1. or in editable mode with:

$ git clone https://github.com/SmartDataAnalytics/BioKEEN.git biokeen
$ cd biokeen
$ python3 -m pip install -e .

How to Use

To start BioKEEN, please run the following command:

biokeen

or alternatively:

python3 -m biokeen

then the command line interface will assist you to configure your experiments.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cthoyt from gravatar.com cthoyt Avatar for mali90 from gravatar.com mali90

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT License (MIT)
  • Author: Mehdi Ali
  • Maintainer: Mehdi Ali
  • Tags KEEN, knowledge embedding
  • Requires: Python >=3.6
Classifiers

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This version

0.0.1

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