biomaj-process

BioMAJ process service

These details have been verified by PyPI

Maintainers

abretaud genouest mboudet osallou

These details have not been verified by PyPI

Project links

Development Status
- 5 - Production/Stable
Environment
- Console
Intended Audience
- Science/Research
License
- OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)
Natural Language
- English
Operating System
- POSIX :: Linux
Programming Language
- Python :: 3
- Python :: 3.4
Topic
- Scientific/Engineering :: Bio-Informatics

Project description

# About

Experimental (in progress) microservice to manage the process execution of biomaj.

A protobuf interface is available in biomaj_process/message/message_pb2.py to exchange messages between BioMAJ and the download service. Messages go through RabbitMQ (to be installed).

# Protobuf

To compile protobuf, in biomaj_process/message:

protoc –python_out=. message.proto

# Development

flake8 biomaj_process

# Prometheus metrics

Endpoint: /api/process/metrics

# Run

## Message consumer: export BIOMAJ_CONFIG=path_to_config.yml python bin/biomaj_process_consumer.py

## Web server

export BIOMAJ_CONFIG=path_to_config.yml gunicorn biomaj_download.biomaj_process_web:app

Web processes should be behind a proxy/load balancer, API base url /api/download

3.0.2:: add logging info execute docker processes in biomaj micro service
3.0.1:: bug fixes
3.0.0:: move process management out of biomaj main package

Project details

These details have been verified by PyPI

Maintainers

abretaud genouest mboudet osallou

These details have not been verified by PyPI

Project links

Development Status
- 5 - Production/Stable
Environment
- Console
Intended Audience
- Science/Research
License
- OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)
Natural Language
- English
Operating System
- POSIX :: Linux
Programming Language
- Python :: 3
- Python :: 3.4
Topic
- Scientific/Engineering :: Bio-Informatics

Release history Release notifications | RSS feed

3.0.19

Aug 29, 2022

3.0.18

May 11, 2022

3.0.16

Nov 13, 2019

3.0.15

Oct 18, 2019

3.0.14

May 3, 2019

3.0.13

Mar 1, 2019

3.0.12

Feb 28, 2019

3.0.11

Aug 22, 2018

3.0.10

Dec 18, 2017

3.0.9

Dec 1, 2017

3.0.8

Aug 24, 2017

3.0.7

Aug 16, 2017

3.0.6

Mar 8, 2017

3.0.5

Mar 2, 2017

3.0.4

Jan 23, 2017

3.0.3

Jan 3, 2017

This version

3.0.2

Dec 13, 2016

3.0.1

Nov 29, 2016

3.0.0

Sep 26, 2016

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