Registries for basic biological entities, coupled to public ontologies.

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  • License: Apache Software License
  • Author: Lamin Labs
  • Provides-Extra: dev
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Stars pypi

bionty: Basic biological entities

  • Access >20 public ontologies such as Gene, Protein, CellMarker, ExperimentalFactor, CellType, CellLine, Tissue, …
  • Create records from entries in public ontologies using .from_source().
  • Access full underlying public ontologies via .public() to search & bulk-create records.
  • Create in-house ontologies by extending public ontologies using hierarchical relationships among records (.parents).
  • Use .synonyms and .abbr to manage synonyms.
  • Safeguards against typos & duplications
  • Ontology versioning

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Avatar for lamindev from gravatar.com lamindev Avatar for sunnyosun from gravatar.com sunnyosun Avatar for zethson from gravatar.com zethson

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Project links
Meta
  • License: Apache Software License
  • Author: Lamin Labs
  • Provides-Extra: dev
Classifiers

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0.52.0

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0.51.1

0.51.0

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0.49.1

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0.48.3

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0.42.0

0.41.1

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0.40.1

0.40.0

0.36.0

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0.35.1

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0.34.1

0.34.0

0.33.1

0.33.0

0.32.0

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0.17a3 pre-release

0.17a2 pre-release

0.17a1 pre-release

0.16.0

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0.14.0

0.13.5

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0.12.0

0.11.6

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0.9.0rc1 pre-release

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0.3.2

0.3.1

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0.2.0

0.1.11

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