Registries for basic biological entities, coupled to public ontologies.

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  • License: Apache Software License
  • Author: Lamin Labs
  • Provides-Extra: dev
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Stars pypi

bionty: Basic biological entities

  • Access >20 public ontologies such as Gene, Protein, CellMarker, ExperimentalFactor, CellType, CellLine, Tissue, …
  • Create records from entries in public ontologies using .from_source().
  • Access full underlying public ontologies via .public() to search & bulk-create records.
  • Create in-house ontologies by extending public ontologies using hierarchical relationships among records (.parents).
  • Use .synonyms and .abbr to manage synonyms.
  • Safeguards against typos & duplications
  • Ontology versioning

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Avatar for lamindev from gravatar.com lamindev Avatar for sunnyosun from gravatar.com sunnyosun Avatar for zethson from gravatar.com zethson

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Project links
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  • License: Apache Software License
  • Author: Lamin Labs
  • Provides-Extra: dev
Classifiers

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0.52.0

0.51.2

0.51.1

0.51.0

0.50.2

0.50.1

0.50.0

This version

0.49.1

0.49.0

0.48.3

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0.48.1

0.48.0

0.47.1

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0.44.0

0.43.1

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0.42.6

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0.42.3

0.42.2

0.42.1

0.42.0

0.41.1

0.41.0

0.40.3

0.40.2

0.40.1

0.40.0

0.36.0

0.35.2

0.35.1

0.35.0

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0.34.2

0.34.1

0.34.0

0.33.1

0.33.0

0.32.0

0.31.2

0.31.1

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0.30.2

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0.21.1

0.21.0

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0.19.1

0.19.0

0.18.1

0.18.0

0.17.0

0.17a3 pre-release

0.17a2 pre-release

0.17a1 pre-release

0.16.0

0.15.1

0.15.0

0.14.0

0.13.5

0.13.4

0.13.3

0.13.2

0.13.1

0.13.0

0.12.1

0.12.0

0.11.6

0.11.5

0.11.4

0.11.3

0.11.2

0.11.1

0.11.0

0.10.1

0.10.0

0.9.0

0.9.0rc1 pre-release

0.8.1

0.8.0

0.8rc3 pre-release

0.8rc2 pre-release

0.8rc1 pre-release

0.7.0

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0.5.7

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0.5.3

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0.5.1

0.5.0

0.4.3

0.4.2

0.4.1

0.4.0

0.3.2

0.3.1

0.3.0

0.2.5

0.2.4

0.2.3

0.2.2

0.2.0

0.1.11

0.1.10

0.1.9

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0.1.1

0.1.0

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0.1a1 pre-release

0.0.6

0.0.5

0.0.4

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