Registries for basic biological entities, coupled to public ontologies.

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Project description

bionty: Basic biological entities

Access >20 public ontologies such as Gene, Protein, CellMarker, ExperimentalFactor, CellType, CellLine, Tissue, …
Create records from entries in public ontologies using .from_source().
Access full underlying public ontologies via .public() to search & bulk-create records.
Create in-house ontologies by extending public ontologies using hierarchical relationships among records (.parents).
Use .synonyms and .abbr to manage synonyms.
Safeguards against typos & duplications
Ontology versioning

Read docs.

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Project links

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Release history Release notifications | RSS feed

0.52.0

Oct 18, 2024

0.51.2

Oct 8, 2024

0.51.1

Sep 30, 2024

0.51.0

Sep 29, 2024

0.50.2

Sep 18, 2024

0.50.1

Sep 9, 2024

This version

0.50.0

Sep 9, 2024

0.49.1

Sep 4, 2024

0.49.0

Aug 27, 2024

0.48.3

Aug 22, 2024

0.48.2

Aug 16, 2024

0.48.1

Aug 14, 2024

0.48.0

Aug 8, 2024

0.47.1

Aug 2, 2024

0.47.0

Aug 2, 2024

0.46.0

Jul 30, 2024

0.45.0

Jul 26, 2024

0.44.3

Jul 26, 2024

0.44.2

Jul 20, 2024

0.44.1

Jul 17, 2024

0.44.0

Jun 13, 2024

0.43.1

May 21, 2024

0.43.0

May 19, 2024

0.42.11

May 14, 2024

0.42.10

May 8, 2024

0.42.9

Apr 18, 2024

0.42.8

Apr 11, 2024

0.42.7

Apr 10, 2024

0.42.6

Apr 5, 2024

0.42.5

Apr 4, 2024

0.42.4

Mar 27, 2024

0.42.3

Mar 26, 2024

0.42.2

Mar 14, 2024

0.42.1

Mar 13, 2024

0.42.0

Mar 8, 2024

0.41.1

Mar 8, 2024

0.41.0

Mar 1, 2024

0.40.3

Jan 31, 2024

0.40.2

Jan 31, 2024

0.40.1

Jan 31, 2024

0.40.0

Jan 30, 2024

0.36.0

Jan 12, 2024

0.35.2

Dec 2, 2023

0.35.1

Nov 21, 2023

0.35.0

Nov 16, 2023

0.34.3

Nov 10, 2023

0.34.2

Nov 10, 2023

0.34.1

Nov 9, 2023

0.34.0

Oct 23, 2023

0.33.1

Oct 19, 2023

0.33.0

Oct 19, 2023

0.32.0

Oct 13, 2023

0.31.2

Sep 8, 2023

0.31.1

Sep 7, 2023

0.31.0

Sep 7, 2023

0.30.3

Sep 5, 2023

0.30.2

Aug 22, 2023

0.30.1

Aug 17, 2023

0.30.0

Aug 16, 2023

0.29.0

Aug 6, 2023

0.28.0

Jul 31, 2023

0.27.0

Jul 31, 2023

0.26.0

Jul 23, 2023

0.25.2

Jul 18, 2023

0.25.1

Jul 17, 2023

0.25.0

Jul 17, 2023

0.24.2

Jul 10, 2023

0.24.1

Jun 30, 2023

0.24.0

Jun 29, 2023

0.23.1

Jun 22, 2023

0.23.0

Jun 20, 2023

0.22.0

Jun 19, 2023

0.21.4

Jun 17, 2023

0.21.3

Jun 16, 2023

0.21.2

Jun 15, 2023

0.21.1

Jun 15, 2023

0.21.0

Jun 15, 2023

0.20.0

Jun 12, 2023

0.19.1

Jun 11, 2023

0.19.0

Jun 10, 2023

0.18.1

Jun 10, 2023

0.18.0

Jun 9, 2023

0.17.0

Jun 8, 2023

0.17a3 pre-release

Jun 7, 2023

0.17a2 pre-release

Jun 7, 2023

0.17a1 pre-release

Jun 4, 2023

0.16.0

Jun 2, 2023

0.15.1

May 29, 2023

0.15.0

May 27, 2023

0.14.0

May 25, 2023

0.13.5

May 11, 2023

0.13.4

May 11, 2023

0.13.3

May 10, 2023

0.13.2

May 10, 2023

0.13.1

May 10, 2023

0.13.0

May 9, 2023

0.12.1

Apr 27, 2023

0.12.0

Apr 27, 2023

0.11.6

Apr 23, 2023

0.11.5

Apr 23, 2023

0.11.4

Apr 19, 2023

0.11.3

Mar 30, 2023

0.11.2

Mar 27, 2023

0.11.1

Mar 27, 2023

0.11.0

Mar 24, 2023

0.10.1

Mar 23, 2023

0.10.0

Mar 21, 2023

0.9.0

Mar 20, 2023

0.9.0rc1 pre-release

Mar 20, 2023

0.8.1

Mar 9, 2023

0.8.0

Mar 9, 2023

0.8rc3 pre-release

Mar 9, 2023

0.8rc2 pre-release

Mar 9, 2023

0.8rc1 pre-release

Mar 6, 2023

0.7.0

Feb 14, 2023

0.6.5

Jan 31, 2023

0.6.4

Jan 18, 2023

0.6.3

Jan 17, 2023

0.6.2

Jan 17, 2023

0.6.1

Jan 12, 2023

0.6.0

Jan 12, 2023

0.5.7

Dec 9, 2022

0.5.6

Dec 8, 2022

0.5.5

Nov 24, 2022

0.5.4

Nov 16, 2022

0.5.3

Nov 15, 2022

0.5.2

Nov 11, 2022

0.5.1

Nov 6, 2022

0.5.0

Oct 26, 2022

0.4.3

Oct 25, 2022

0.4.2

Oct 24, 2022

0.4.1

Oct 20, 2022

0.4.0

Oct 12, 2022

0.3.2

Oct 11, 2022

0.3.1

Oct 3, 2022

0.3.0

Sep 28, 2022

0.2.5

Sep 26, 2022

0.2.4

Aug 29, 2022

0.2.3

Aug 28, 2022

0.2.2

Aug 28, 2022

0.2.0

Aug 26, 2022

0.1.11

Aug 18, 2022

0.1.10

Aug 18, 2022

0.1.9

Aug 11, 2022

0.1.8

Aug 10, 2022

0.1.7

Aug 8, 2022

0.1.6

Jul 31, 2022

0.1.5

Jul 31, 2022

0.1.4

Jul 28, 2022

0.1.3

Jul 28, 2022

0.1.2

Jul 11, 2022

0.1.1

Jul 5, 2022

0.1.0

Jun 22, 2022

0.1a3 pre-release

Jun 22, 2022

0.1a2 pre-release

Jun 20, 2022

0.1a1 pre-release

Jun 13, 2022

0.0.6

Apr 6, 2022

0.0.5

Apr 6, 2022

0.0.4

Apr 5, 2022

0.0.3

Apr 5, 2022

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