What's the current version for each biological database?
Project description
Bioversions
What's the current version for each biological database?
Installation
pip install -e .
Usage
import bioversions
bioversion = bioversions.resolve('biogrid')
assert bioversion.version == '4.2.192', 'This was true on Dec 5th, 2020!'
By default, the results are cached and only refreshed once per day with
the help of cachier. The cache is stored in ~/.data/bioversions. The
cache location can be overridden by setting the BIOVERSIONS_HOME environment
variable via pystow.
Web Application
Run the web application in your shell with
$ bioversions
Options can be listed with bioversions --help.
You can navigate to http://localhost:5000 to see all versions
as HTML or programmatically resolve given databases with the
http://localhost:5000/database/<name> endpoint like in the
following:
import requests
res = requests.get('http://localhost:5000/database/biogrid').json()
assert res['success']
assert res['result']['name'] == 'BioGRID'
assert res['result']['version'] == '4.2.192', 'This was true on Dec 5th, 2020!'
Contributing
To add more databases to the list, you can create a new submodule of
bioversions.sources and extend the bioversions.utils.Getter class
to identify the most recent version for your target database. See
bioversions.sources.biogrid as an example.
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