clinica-pydra-ants

Pydra tasks for ANTs designed for Clinica

Pydra is a dataflow engine which provides a set of lightweight abstractions for DAG construction, manipulation, and distributed execution.

ANTs is a toolbox for multi-variate image registration, segmentation and statistical analysis.

Clinica is a software platform for clinical neuroimaging studies.

Table of Contents

• Available Tasks
• Installation
• Development
• License

Available Tasks

• ApplyTransforms
• CreateJacobianDeterminantImage
• N4BiasFieldCorrection
• Registration, registration_syn, registration_syn_quick

Installation

pip install clinica-pydra-ants

A separate installation of ANTs is required to use this package.

An official conda package is available through conda-forge:

conda install -c conda-forge ants

Development

This project is managed with Hatch:

pipx install hatch

To run the test suite:

hatch run test

To fix linting issues:

hatch fmt

License

This project is distributed under the terms of the Apache License, Version 2.0.