A package that wraps PyHGNC to perform mappings between different gene identifiers
Project description
This package support the mapping across different protein/gene identifiers.
Citation
Gray KA, Yates B, Seal RL, Wright MW, Bruford EA. genenames.org: the HGNC resources in 2015. Nucleic Acids Res. 2015 Jan;43(Database issue):D1079-85. doi: 10.1093/nar/gku1071. http://www.ncbi.nlm.nih.gov/pubmed/25361968
Installation 
compath_hgnc can be installed easily from PyPI with the following code in your favorite terminal:
$ python3 -m pip install compath_hgncor from the latest code on GitHub with:
$ python3 -m pip install git+https://github.com/compath/compath_hgnc.git@masterSetup
HGNC can be downloaded and populated from either the Python REPL or the automatically installed command line utility.
Python REPL
>>> import compath_hgnc
>>> compath_hgnc_manager = compath_hgnc.Manager()
>>> compath_hgnc_manager.populate()Command Line Utility
compath_hgnc populateAcknowledgements
This package heavily relies on Andrej Konotopez’s package PyHGNC and the Bio2BEL HGNC.
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