Analysis tools for genomic interaction data stored in .cool format
Project description
cooltools
The tools for your .cool's
Calling compartments
To call compartments, use cooltools to calculate the first three eigenvectors
across the matrix.
cooltools call-compartments ${fullfile}::/resolutions/100000 --out-prefix $filename;
Sample output:
chrom start end E1 E2 E3
1 0 100000
...
1 3000000 3100000 3.009943538549052 2.762190276669322 0.13578728460826148
...
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