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Project description

cwl-utils

A collection of scripts to demonstrate the use of the new Python classes for loading and parsing CWL v1.0 documents.

cwl_utils/parser_v1_0.py was created via schema-salad-tool --codegen python https://github.com/common-workflow-language/common-workflow-language/raw/master/v1.0/CommonWorkflowLanguage.yml

Install

Requires Python 3.6.x or Python 3.7

git clone https://github.com/common-workflow-language/cwl-utils.git
virtualenv -p python3.6 venv3.6
source venv3.6/bin/activate
pip install cwl-utils

Usage

Pull the image with Docker

This is the default behaviour:

python docker_extract.py DIRECTORY path_to_my_workflow.cwl

Pull the image with Singularity

python docker_extract.py --singularity DIRECTORY path_to_my_workflow.cwl

Regenerate

To regenerate install schema_salad package and run:

schema-salad-tool --codegen python \
    https://raw.githubusercontent.com/common-workflow-language/common-workflow-language/master/v1.0/CommonWorkflowLanguage.yml

Release

To release CWLUtils, bump the version in cwl_utils/__meta__.py, and tag that commit with the new version. TravisCI should release that tag.

Project details

Release history Release notifications | RSS feed

0.35

Oct 14, 2024

0.34

Sep 8, 2024

0.33

Apr 10, 2024

0.32

Dec 1, 2023

0.31

Nov 13, 2023

0.30 yanked

Oct 26, 2023

Reason this release was yanked:

broken format field parsing and other issues

0.29

Sep 2, 2023

0.28

Jun 1, 2023

0.27

May 17, 2023

0.26

May 11, 2023

0.25

May 2, 2023

0.24

Apr 13, 2023

0.23

Feb 1, 2023

0.22

Jan 26, 2023

0.21

Nov 28, 2022

0.20

Sep 27, 2022

0.19

Sep 13, 2022

0.18

Sep 7, 2022

0.17

Sep 2, 2022

0.16

Aug 25, 2022

0.15

Aug 19, 2022

0.14

Jul 15, 2022

0.13

Nov 11, 2021

0.12

Nov 7, 2021

0.11

Jul 2, 2021

0.10

Jun 16, 2021

0.9

Dec 11, 2020

0.8

Dec 11, 2020

This version

0.7

Aug 11, 2020

0.6

Jul 9, 2020

0.5

Jun 13, 2020

0.4

Jun 9, 2020

0.3

Jan 10, 2020

0.2

Jan 8, 2020

0.1

Jan 23, 2019

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