No project description provided
Project description
cwl-utils
A collection of scripts to demonstrate the use of the new Python classes for loading and parsing CWL v1.0 documents.
cwl_utils/parser_v1_0.py was created via
schema-salad-tool --codegen python https://github.com/common-workflow-language/common-workflow-language/raw/master/v1.0/CommonWorkflowLanguage.yml
Install
Requires Python 3.6.x or Python 3.7
git clone https://github.com/common-workflow-language/cwl-utils.git
virtualenv -p python3.6 venv3.6
source venv3.6/bin/activate
pip install cwl-utils
Usage
Pull the image with Docker
This is the default behaviour:
python docker_extract.py DIRECTORY path_to_my_workflow.cwl
Pull the image with Singularity
python docker_extract.py --singularity DIRECTORY path_to_my_workflow.cwl
Regenerate
To regenerate install schema_salad package and run:
schema-salad-tool --codegen python \
https://raw.githubusercontent.com/common-workflow-language/common-workflow-language/master/v1.0/CommonWorkflowLanguage.yml
Release
To release CWLUtils, bump the version in cwl_utils/__meta__.py, and tag that commit with the new version. TravisCI should release that tag.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
cwl-utils-0.8.tar.gz
(158.2 kB
view hashes)
Built Distribution
cwl_utils-0.8-py3-none-any.whl
(256.5 kB
view hashes)
