Skip to main content

CyLinter

Project description

![](docs/assets/images/cylinter-logo.svg)

## An Interactive Image Segmentation Filter for Multiplex Microscopy.

CyLinter is quality control software for identifying and removing cell segmentation instances corrupted by optical and/or image-processing artifacts in multiplex microscopy images. The tool is user-guided and comprises a set of modular and extensible QC modules instantiated in a configurable [Python](https://www.python.org) Class object. Module results are cached to allow for dynamic restarts.

CyLinter development is led by [Greg Baker](https://github.com/gjbaker) at the [Laboratory of Systems Pharmacology](https://hits.harvard.edu/the-program/laboratory-of-systems-pharmacology/about/), Harvard Medical School.

Funding: This work is supported by the following:

  • NCI grant U2C-CA233262: Pre-cancer Atlases of Cutaneous and Hematologic Origin

  • NIH grant U54CA225088: Systems Pharmacology of Therapeutic and Adverse Responses to Immune Checkpoint and Small Molecule Drugs

  • Ludwig Center at Harvard Medical School and the Ludwig Cancer Research Foundation

Instructions: https://labsyspharm.github.io/cylinter/

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

cylinter-0.0.45.tar.gz (63.9 kB view details)

Uploaded Source

File details

Details for the file cylinter-0.0.45.tar.gz.

File metadata

  • Download URL: cylinter-0.0.45.tar.gz
  • Upload date:
  • Size: 63.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.10.9

File hashes

Hashes for cylinter-0.0.45.tar.gz
Algorithm Hash digest
SHA256 2dcf1064a32880b9696293491a85caf1d761b5491667265033afe0afa499c931
MD5 0ec0727504d42ca09b8c0ec7d2b6e036
BLAKE2b-256 c0d0e80c883c25650e547ffcace71ca053506a113d37c2f9198046175115c646

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page