CyLinter
Project description
## An Interactive Image Segmentation Filter for Multiplex Microscopy.
CyLinter cleans image-derived, single-cell data by identifying and removing cell segmentation instances in multiplexed whole tissue and tissue microarray images corrupted by optical and/or image preprocessing artifacts. The tool comprises a set of user-guided, quality control (QC) modules instantiated in a configurable [Python](https://www.python.org) Class. The results of each module are cached to allow for dynamic restarts and iterative QC strategies.
CyLinter development is led by [Greg Baker](https://github.com/gjbaker) at [Laboratory of Systems Pharmacology](https://hits.harvard.edu/the-program/laboratory-of-systems-pharmacology/about/), Harvard Medical School.
Funding: This work is supported by the following:
NIH grant U54CA225088: Systems Pharmacology of Therapeutic and Adverse Responses to Immune Checkpoint and Small Molecule Drugs
Ludwig Center at Harvard Medical School and the Ludwig Cancer Research Foundation
Instructions: https://labsyspharm.github.io/cylinter/
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file cylinter-0.0.17.tar.gz.
File metadata
- Download URL: cylinter-0.0.17.tar.gz
- Upload date:
- Size: 39.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.3.0 pkginfo/1.7.0 requests/2.25.1 setuptools/47.1.0 requests-toolbelt/0.9.1 tqdm/4.57.0 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 156b1cbbeaeb30526a3d081ce95324dd5b59915d89b29463b609a50e86ca7641 |
|
| MD5 | 2ecbdba395b8887b04c743325167bdfc |
|
| BLAKE2b-256 | 6476835407be712c6d4759994280fdb888f3280db1434d31ede53c723d5db22d |
File details
Details for the file cylinter-0.0.17-py3-none-any.whl.
File metadata
- Download URL: cylinter-0.0.17-py3-none-any.whl
- Upload date:
- Size: 41.7 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.3.0 pkginfo/1.7.0 requests/2.25.1 setuptools/47.1.0 requests-toolbelt/0.9.1 tqdm/4.57.0 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 4a32224a6116d57d2bf6b8f31f5f9d0ad4c64354ad9ea1242990464db3fc2849 |
|
| MD5 | 6c0bb44c247c574b3697d4a25107f218 |
|
| BLAKE2b-256 | 854b25ecba0d50f125468bcf3032d0d6724f27db4d3bafa346ccb0037029cb34 |
