d3m-segmentation-models-pytorch 0.1.3

The main features of this library are:

• High level API (just two lines to create neural network)
• 8 models architectures for binary and multi class segmentation (including legendary Unet)
• 99 available encoders
• All encoders have pre-trained weights for faster and better convergence

📚 Project Documentation 📚

Visit Read The Docs Project Page or read following README to know more about Segmentation Models Pytorch (SMP for short) library

📋 Table of content

1. Quick start
2. Examples
3. Models
   1. Architectures
   2. Encoders
4. Models API
   1. Input channels
   2. Auxiliary classification output
   3. Depth
5. Installation
6. Competitions won with the library
7. Contributing
8. Citing
9. License

⏳ Quick start

1. Create your first Segmentation model with SMP

Segmentation model is just a PyTorch nn.Module, which can be created as easy as:

import segmentation_models_pytorch as smp

model = smp.Unet(
    encoder_name="resnet34",        # choose encoder, e.g. mobilenet_v2 or efficientnet-b7
    encoder_weights="imagenet",     # use `imagenet` pretreined weights for encoder initialization
    in_channels=1,                  # model input channels (1 for grayscale images, 3 for RGB, etc.)
    classes=3,                      # model output channels (number of classes in your dataset)
)

• see table with available model architectures
• see table with avaliable encoders and its corresponding weights

2. Configure data preprocessing

All encoders have pretrained weights. Preparing your data the same way as during weights pretraining may give your better results (higher metric score and faster convergence). But it is relevant only for 1-2-3-channels images and not necessary in case you train the whole model, not only decoder.

from segmentation_models_pytorch.encoders import get_preprocessing_fn

preprocess_input = get_preprocessing_fn('resnet18', pretrained='imagenet')

Congratulations! You are done! Now you can train your model with your favorite framework!

💡 Examples

• Training model for cars segmentation on CamVid dataset here.
• Training SMP model with Catalyst (high-level framework for PyTorch), TTAch (TTA library for PyTorch) and Albumentations (fast image augmentation library) - here

📦 Models

Architectures

• Unet [paper] [docs]
• Unet++ [paper] [docs]
• Linknet [paper] [docs]
• FPN [paper] [docs]
• PSPNet [paper] [docs]
• PAN [paper] [docs]
• DeepLabV3 [paper] [docs]
• DeepLabV3+ [paper] [docs]

Encoders

The following is a list of supported encoders in the SMP. Select the appropriate family of encoders and click to expand the table and select a specific encoder and its pre-trained weights (encoder_name and encoder_weights parameters).

* ssl, swsl - semi-supervised and weakly-supervised learning on ImageNet (repo).

🔁 Models API

• model.encoder - pretrained backbone to extract features of different spatial resolution
• model.decoder - depends on models architecture (Unet/Linknet/PSPNet/FPN)
• model.segmentation_head - last block to produce required number of mask channels (include also optional upsampling and activation)
• model.classification_head - optional block which create classification head on top of encoder
• model.forward(x) - sequentially pass x through model`s encoder, decoder and segmentation head (and classification head if specified)

Input channels

Input channels parameter allow you to create models, which process tensors with arbitrary number of channels. If you use pretrained weights from imagenet - weights of first convolution will be reused for 1- or 2- channels inputs, for input channels > 4 weights of first convolution will be initialized randomly.

model = smp.FPN('resnet34', in_channels=1)
mask = model(torch.ones([1, 1, 64, 64]))

Auxiliary classification output

All models support aux_params parameters, which is default set to None. If aux_params = None than classification auxiliary output is not created, else model produce not only mask, but also label output with shape NC. Classification head consist of GlobalPooling->Dropout(optional)->Linear->Activation(optional) layers, which can be configured by aux_params as follows:

aux_params=dict(
    pooling='avg',             # one of 'avg', 'max'
    dropout=0.5,               # dropout ratio, default is None
    activation='sigmoid',      # activation function, default is None
    classes=4,                 # define number of output labels
)
model = smp.Unet('resnet34', classes=4, aux_params=aux_params)
mask, label = model(x)

Depth

Depth parameter specify a number of downsampling operations in encoder, so you can make your model lighted if specify smaller depth.

model = smp.Unet('resnet34', encoder_depth=4)

🛠 Installation

PyPI version:

$ pip install segmentation-models-pytorch

Latest version from source:

$ pip install git+https://github.com/qubvel/segmentation_models.pytorch

🏆 Competitions won with the library

Segmentation Models package is widely used in the image segmentation competitions. Here you can find competitions, names of the winners and links to their solutions.

🤝 Contributing

Run test

$ docker build -f docker/Dockerfile.dev -t smp:dev . && docker run --rm smp:dev pytest -p no:cacheprovider

Generate table

$ docker build -f docker/Dockerfile.dev -t smp:dev . && docker run --rm smp:dev python misc/generate_table.py

📝 Citing

@misc{Yakubovskiy:2019,
  Author = {Pavel Yakubovskiy},
  Title = {Segmentation Models Pytorch},
  Year = {2020},
  Publisher = {GitHub},
  Journal = {GitHub repository},
  Howpublished = {\url{https://github.com/qubvel/segmentation_models.pytorch}}
}

🛡️ License

Project is distributed under MIT License