Library of Python utilities that I needed so many times
Project description
ddgen
Library of Python utilities that I needed so many times in the past
Select RefSeq transcript with the highest priority
RefSeq transcripts have following categories:
NM_,XM_,NR_,XR_
If we have transcripts from multiple sources, we want to select the one coming from the source with highest priority.
E.g.
NM_has higher priority thanXM_.
If we have multiple transcripts from a single source, we want to select the one with smaller integer.
E.g.
NM_123.4has higher priority thanNM_124.4.
from ddgen.utils import txs
# tx will be `NM_123.4`
tx = txs.prioritize_refseq_transcripts(['NM_123.4', 'NM_124.4', 'XM_100.1'])
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