deepTools

Useful tools for exploring deep sequencing data.

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Project description

deepTools addresses the challenge of handling the large amounts of data that are now routinely generated from DNA sequencing centers. deepTools contains useful modules to process the mapped reads data for multiple quality checks, creating normalized coverage files in standard bedGraph and bigWig file formats, that allow comparison between different files (for example, treatment and control). Finally, using such normalized and standardized files, deepTools can create many publication-ready visualizations to identify enrichments and for functional annotations of the genome.

For support or questions please make a post on Biostars. For feature requests, please open an issue on github.

For further documentation, please see our read the docs page.

Citation:

Ramírez F, Ryan DP, Grüning B, Bhardwaj V, Kilpert F, Richter AS, Heyne S, Dündar F, Manke T. deepTools2: a next generation web server for deep-sequencing data analysis. Nucleic Acids Research. 2016 Apr 13:gkw257.

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Project links

Release history Release notifications | RSS feed

3.5.5

Mar 8, 2024

This version

3.5.4.post1

Sep 27, 2023

3.5.3

Aug 29, 2023

3.5.2

Jun 14, 2023

3.5.1

Mar 17, 2021

3.5.0

Aug 21, 2020

3.4.3

Apr 16, 2020

3.4.2

Apr 5, 2020

3.4.1

Mar 15, 2020

3.4.0

Mar 5, 2020

3.3.2

Jan 23, 2020

3.3.1

Sep 10, 2019

3.3.0

May 29, 2019

3.2.1

Apr 1, 2019

3.2.0

Feb 18, 2019

3.1.3

Oct 4, 2018

3.1.2

Aug 21, 2018

3.1.1

Jul 27, 2018

3.1.0

Jun 21, 2018

3.0.2

Apr 4, 2018

3.0.1

Mar 2, 2018

3.0.0

Feb 12, 2018

2.5.7

Feb 5, 2018

2.5.6

Jan 28, 2018

2.5.5

Jan 25, 2018

2.5.4

Nov 3, 2017

2.5.3

Jul 24, 2017

2.5.2

Jul 10, 2017

2.5.1

May 12, 2017

2.5.0.1

Apr 2, 2017

2.5.0

Mar 31, 2017

2.4.3

Mar 14, 2017

2.4.2

Jan 13, 2017

2.4.1

Dec 5, 2016

2.4.0

Nov 2, 2016

2.3.6

Oct 19, 2016

2.3.5

Sep 19, 2016

2.3.4

Aug 23, 2016

2.3.3

Jul 28, 2016

2.3.2

Jul 26, 2016

2.3.1

Jul 14, 2016

2.3.0

Jul 13, 2016

2.2.4

Apr 27, 2016

2.2.3

Apr 8, 2016

2.2.2

Mar 8, 2016

2.2.1

Mar 7, 2016

2.2.0

Mar 1, 2016

2.1.0

Feb 11, 2016

2.0.1

Jan 25, 2016

1.5.12

Nov 30, 2015

1.5.11

Jun 8, 2015

1.5.10

May 4, 2015

1.5.9.1

Sep 9, 2014

1.5.9

Sep 8, 2014

1.5.8.2

Aug 22, 2014

1.5.8.1

Jun 12, 2014

1.5.8

Apr 2, 2014

1.5.7

Feb 5, 2014

1.5.6

Jan 14, 2014

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