Machine Learning, Statistics and Utilities around Developer Productivity, Company Productivity and Project Productivity
Project description
devml
Machine Learning, Statistics and Utilities around Developer Productivity
A few handy bits of functionality:
Can checkout all repositories in Github
Converts a tree of checked out repositories on disk into a pandas dataframe
Statistics on combined DataFrames
Installation
pip install devml
This pip install installs a command-line tool: dml (which is referenced in the documentation below). And also library devml, which is referenced below as well.
Get environment setup
Code is written to support Python 3.6 or greater. You can get that here: https://www.python.org/downloads/release/python-360/.
An easy way to run the project locally is to check the repo out and in the root of the repo run:
make setup
This create a virtualenv in ~/.devml
Next, source that virtualenv:
source ~/.devml/bin/activate
Run Make All (installs, lints and tests)
make all # #Example output #(.devml) ➜ devml git:(master) make all #pip install -r requirements.txt #Requirement already satisfied: pytest in /Users/noahgift/.devml/lib/python3.6/site-packages (from -r requirements.txt (line #1) ---------- coverage: platform darwin, python 3.6.2-final-0 ----------- Name Stmts Miss Cover ---------------------------------------------- devml/__init__.py 1 0 100% devml/author_stats.py 6 6 0% devml/fetch_repo.py 54 42 22% devml/mkdata.py 84 21 75% devml/org_stats.py 76 55 28% devml/post_processing.py 50 35 30% devml/state.py 29 9 69% devml/stats.py 55 43 22% devml/ts.py 29 14 52% devml/util.py 12 4 67% dml.py 111 66 41% ---------------------------------------------- TOTAL 507 295 42% ....
You don’t use virtualenv or don’t want to use it. No problem, just run make all it should probably work if you have python 3.6 installed.
make all
Explore Jupyter Notebooks on Github Organizations
You can explore combined datasets here using this example as a starter:
https://github.com/noahgift/devml/blob/master/notebooks/github_data_exploration.ipynb
Pallets Project
Explore Jupyter Notebooks on Repository Churn
You can explore File Metadata exploration example here:
https://github.com/noahgift/devml/blob/master/notebooks/repo_file_exploration.ipynb
All Files Churned by type:
Pallets Project Relative Churn by file type
Summary Churn Statistics by type:
Pallets Project by file type Churn statistics
Expected Configuration
The command-line tools expects for you to create a project directory with a config.json file. Inside the config.json file, you will need to provide an oath token. You can find information about how to do that here: https://help.github.com/articles/creating-a-personal-access-token-for-the-command-line/.
Alternately, you can pass these values in via the python API or via the command-line as options. They stand for the following:
org: Github Organization (To clone entire tree of repos)
checkout_dir: place to checkout
oath: personal oath token generated from Github
➜ devml git:(master) ✗ cat project/config.json
{
"project" :
{
"org":"pallets",
"checkout_dir": "/tmp/checkout",
"oath": "<keygenerated from Github>"
}
}
Basic command-line Usage
You can find out stats for a checkout or a directory full of checkout as follows
dml gstats author --path ~/src/mycompanyrepo(s)
Top Commits By Author: author_name commits
0 John Smith 3059
1 Sally Joe 2995
2 Greg Mathews 2194
3 Jim Mayflower 1448Basic API Usage (Converting a tree of repo(s) into a pandas DataFrame)
In [1]: from devml import (mkdata, stats)
In [2]: org_df = mkdata.create_org_df(path=/src/mycompanyrepo(s)")
In [3]: author_counts = stats.author_commit_count(org_df)
In [4]: author_counts.head()
Out[4]:
author_name commits
0 John Smith 3059
1 Sally Joe 2995
2 Greg Mathews 2194
3 Jim Mayflower 1448
4 Truck Pritter 1441
Clone all repos in Github using API
In [1]: from devml import (mkdata, stats, state, fetch_repo)
In [2]: dest, token, org = state.get_project_metadata("../project/config.json")
In [3]: fetch_repo.clone_org_repos(token, org,
dest, branch="master")
017-10-14 17:11:36,590 - devml - INFO - Creating Checkout Root: /tmp/checkout
2017-10-14 17:11:37,346 - devml - INFO - Found Repo # 1 REPO NAME: flask , URL: git@github.com:pallets/flask.git
2017-10-14 17:11:37,347 - devml - INFO - Found Repo # 2 REPO NAME: pallets-sphinx-themes , URL: git@github.com:pallets/pallets-sphinx-themes.git
2017-10-14 17:11:37,347 - devml - INFO - Found Repo # 3 REPO NAME: markupsafe , URL: git@github.com:pallets/markupsafe.git
2017-10-14 17:11:37,348 - devml - INFO - Found Repo # 4 REPO NAME: jinja , URL: git@github.com:pallets/jinja.git
2017-10-14 17:11:37,349 - devml - INFO - Found Repo # 5 REPO NAME: werkzeug , URL: git@githu
In [4]: !ls -l /tmp/checkout
total 0
drwxr-xr-x 21 noahgift wheel 672 Oct 14 17:11 click
drwxr-xr-x 25 noahgift wheel 800 Oct 14 17:11 flask
drwxr-xr-x 11 noahgift wheel 352 Oct 14 17:11 flask-docs
drwxr-xr-x 12 noahgift wheel 384 Oct 14 17:11 flask-ext-migrate
drwxr-xr-x 8 noahgift wheel 256 Oct 14 17:11 flask-snippets
drwxr-xr-x 14 noahgift wheel 448 Oct 14 17:11 flask-website
drwxr-xr-x 18 noahgift wheel 576 Oct 14 17:11 itsdangerous
drwxr-xr-x 23 noahgift wheel 736 Oct 14 17:11 jinja
drwxr-xr-x 18 noahgift wheel 576 Oct 14 17:11 markupsafe
drwxr-xr-x 4 noahgift wheel 128 Oct 14 17:11 meta
drwxr-xr-x 10 noahgift wheel 320 Oct 14 17:11 pallets-sphinx-themes
drwxr-xr-x 9 noahgift wheel 288 Oct 14 17:11 pocoo-sphinx-themes
drwxr-xr-x 15 noahgift wheel 480 Oct 14 17:11 website
drwxr-xr-x 25 noahgift wheel 800 Oct 14 17:11 werkzeug
Advanced CLI-Churn: Get churn by file type
Get the top ten files sorted by churn count with the extension .py:
✗ dml gstats churn --path /Users/noahgift/src/flask --limit 10 --ext .py
2017-10-15 12:10:55,783 - devml.post_processing - INFO - Running churn cmd: [git log --name-only --pretty=format:] at path [/Users/noahgift/src/flask]
files churn_count line_count extension \
1 b'flask/app.py' 316 2183.0 .py
3 b'flask/helpers.py' 176 1019.0 .py
5 b'tests/flask_tests.py' 127 NaN .py
7 b'flask.py' 104 NaN .py
8 b'setup.py' 80 112.0 .py
10 b'flask/cli.py' 75 759.0 .py
11 b'flask/wrappers.py' 70 194.0 .py
12 b'flask/__init__.py' 65 49.0 .py
13 b'flask/ctx.py' 62 415.0 .py
14 b'tests/test_helpers.py' 62 888.0 .py
relative_churn
1 0.14
3 0.17
5 NaN
7 NaN
8 0.71
10 0.10
11 0.36
12 1.33
13 0.15
14 0.07
Get descriptive statistics for extension .py and compare to another repository
In this example, flask, this repo and cpython are all compared to see how the median churn is.
(.devml) ➜ devml git:(master) dml gstats metachurn --path /Users/noahgift/src/flask --ext .py --statistic median
2017-10-15 12:39:44,781 - devml.post_processing - INFO - Running churn cmd: [git log --name-only --pretty=format:] at path [/Users/noahgift/src/flask]
MEDIAN Statistics:
churn_count line_count relative_churn
extension
.py 2 85.0 0.13
(.devml) ➜ devml git:(master) dml gstats metachurn --path /Users/noahgift/src/devml --ext .py --statistic median
2017-10-15 12:40:10,999 - devml.post_processing - INFO - Running churn cmd: [git log --name-only --pretty=format:] at path [/Users/noahgift/src/devml]
MEDIAN Statistics:
churn_count line_count relative_churn
extension
.py 1 62.5 0.02
(.devml) ➜ devml git:(master) dml gstats metachurn --path /Users/noahgift/src/cpython --ext .py --statistic median
2017-10-15 12:42:19,260 - devml.post_processing - INFO - Running churn cmd: [git log --name-only --pretty=format:] at path [/Users/noahgift/src/cpython]
MEDIAN Statistics:
churn_count line_count relative_churn
extension
.py 7 169.5 0.1
Compare CPython Active Ratio with Linux Active Ratio
# Linux Development Active Ratio
dml gstats activity --path /Users/noahgift/src/linux --sort active_days
author_name active_days active_duration active_ratio
14541 Takashi Iwai 1677 4590 days 0.370000
4382 Eric Dumazet 1460 4504 days 0.320000
3641 David S. Miller 1428 4513 days 0.320000
7216 Johannes Berg 1329 4328 days 0.310000
8717 Linus Torvalds 1281 4565 days 0.280000
275 Al Viro 1249 4562 days 0.270000
9915 Mauro Carvalho Chehab 1227 4464 days 0.270000
9375 Mark Brown 1198 4187 days 0.290000
3172 Dan Carpenter 1158 3972 days 0.290000
12979 Russell King 1141 4602 days 0.250000
1683 Axel Lin 1040 2720 days 0.380000
400 Alex Deucher 1036 3497 days 0.300000
# CPython Development Active Ratio
author_name active_days active_duration active_ratio
146 Guido van Rossum 2256 9673 days 0.230000
301 Raymond Hettinger 1361 5635 days 0.240000
128 Fred Drake 1239 5335 days 0.230000
47 Benjamin Peterson 1234 3494 days 0.350000
132 Georg Brandl 1080 4091 days 0.260000
375 Victor Stinner 980 2818 days 0.350000
235 Martin v. Löwis 958 5266 days 0.180000
36 Antoine Pitrou 883 3376 days 0.260000
362 Tim Peters 869 5060 days 0.170000
164 Jack Jansen 800 4998 days 0.160000
24 Andrew M. Kuchling 743 4632 days 0.160000
330 Serhiy Storchaka 720 1759 days 0.410000
44 Barry Warsaw 696 8485 days 0.080000
52 Brett Cannon 681 5278 days 0.130000
262 Neal Norwitz 559 2573 days 0.220000
In this analysis, Guido of Python has a 23% probability of working on a given day, and Linux has a 28% chance.
Deletion Statistics
Find all delete files from repository
dml gstats deleted --path /Users/noahgift/src/flask
DELETION STATISTICS
files ext
0 b'tests/test_deprecations.py' .py
1 b'scripts/flask-07-upgrade.py' .py
2 b'flask/ext/__init__.py' .py
3 b'flask/exthook.py' .py
4 b'scripts/flaskext_compat.py' .py
5 b'tests/test_ext.py' .py
FAQ
What is Churn and Why Do I Care?
Code churn is the amount of times a file has been modified. Relative churn is the amount of times it has been modified relative to lines of code. Research into defects in software has shown that relative code churn is highly predictive of defects, i.e., the greater the relative churn number the higher the amount of defects.
“Increase in relative code churn measures is accompanied by an increase in system defect density; “
You can read the entire study here: https://www.microsoft.com/en-us/research/wp-content/uploads/2016/02/icse05churn.pdf
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