Converts Dynamo table files to RELION star files
Project description
Dynamo2Relion
A Tiny Function to Convert Dynamo Tables to Star Files for RELION 4.0
Based on dynamo2m by Alister Burt.
Installation
Installation is carried out via:
pip install dynamo2relion
Requirements
Your directory containing the tilt series directories must be structured as follows:
tilt_series_directory #Directory containing all TS directories, link to this directory
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--> TS_01 #Directory containing TS_01
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--> TS_01.mrc #TS_01 image stack. The file extension does not matter.
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--> TS_02
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-->TS_02.mrc #
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--> etc...
The program will ask you the path to tilt_series_directory. No directories other than the TS_* directories should be present in tilt_series_directory. Naming convention for the TS_* directories can be any mix of upper of lower case TS and any numbering convention desired.
Usage
Instructions for use can be found via typing:
dynamo2relion --help
For binning level, simply enter 1 if the coordinates of your particles in the Dynamo table were picked from an unbinned tomogram. If the tomograms the particles were picked in were binned, add the correct binning level: binning is done using IMOD convention, i.e. for a pixel size of 1 A/px, a binning level of 8 would yield 8 A/px.
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