User interface for LabCAS, for EDRN
Project description
User interface for the Early Detection Research Network (EDRN) Laboratory Catalog and Archive System (LabCAS). Developed by the EDRN Informatics Center (IC), operated by the Jet Propulsion Laboratory (JPL), which itself is operated by the California Institute of Technology (CalTech).
Running a Development Instance
Easy. First copy dev.cfg.in to dev.cfg and set the ldap-manager-password in the [secrets] section. Then:
ssh -L 9000:localhost:9000 -L 9001:localhost:9001 -L 9002:localhost:9002 -L 8080:localhost:8080 -L 8983:localhost:8983 labcas-dev.jpl.nasa.gov python2.7 bootstrap.py -c dev.cfg bin/buildout -c dev.cfg bin/pserve --reload parts/templates/paste-dev.cfg
Then visit http://localhost:6543/ with a browser.
Installation
Download the src
Add [versions] in etc/versions/eggs.cfg
Copy ops.cfg.in to ops.cfg; if you re-use last version’s ops.cfg, change the session and authorization tokens!
Run buildout
Fix cronjob
Run initial cron
Fix symlink
Maybe when tagging a release we do both setup.py and [versions]?
Changelog
What follows is a history of changes from release to release. Where issue IDs are listed below, you can find out more about them by visiting the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA.
1.0.3 — Dan’s Other Email
This release addresses points raised in another eamil from Dan. There are no JIRA issues.
1.0.2 — Dan’s Email
This release addresses points raised in Dan’s email. There are no JIRA issues.
1.0.1 — Free and Clear, Baby!
CA-1541, Implement guided selection of choices for NIST workflow
CA-1485, Do not display LabcasUpload2Workflow
CA-1503, Controlled vocabularies for discipline, institution, organ, species, specimen type
CA-1504, ProtoocolName metadata field doesn’t appear
CA-1505, Pass identifiers based on names selected
CA-1506, DataCustodian should default
CA-1508, DatasetId should not be a UUID if a name is given
CA-1519, Support authorization cookie for labcas-backend
CA-1530, Use input.dataset.FIELD.order and input.dataset.FIELD.visible
CA-1532, Metadata ordering and URL type
CA-1533, SpeciesId, SpecimenType, and QAState not being sent
CA-1540, Update UI for NIST workflow
CA-1550, Free text search in LabCAS UI
1.0.0 — Wait, That’s Not His First Name?
CA-1478, Suppress display of LabCAS Product and ECAS Product
CA-1479, Replace EDRN with MCL
CA-1480, Remove mentions of collaborative groups since MCL doesn’t have them
CA-1481, Replace OrganSite with Organ
CA-1482, Do not display both Title and Name for a Collection (they are the same)
CA-1483, Do not display UNKNOWN fields
CA-1484, Missing metadata fields in UI display
0.0.3 — Yes I Would Care to Make a Release
CA-1475, LabCAS backend changes caused issues for UI
CA-1475, Permissions in LabCAS UI
CA-1474, Double collections/collections path in LabCAS UI
CA-1473, Remove pre-staged files from aborted uploads
CA-1472, Differentiate between upload and non-upload workflows
CA-1471, Use workflow’s CollectionName to select the staging directory instead of asking for a target collection
CA-1422, Support browsing of collections / datasets / files
CA-1451, Display more human collection names
CA-1452, Use “DownloadId” to download files
CA-1457, Expose Data Upload on top-level page
CA-1458, Upload to sub-directory
CA-1461, Workflow invocation should not be hard-coded
0.0.2 — TBD
CA-1381, Increase the number of files displayed by LabCAS UI
CA-1382, Support for NIST dataset ID generation
CA-1384, Use pull-downs for menus with many choices
CA-1386, UI should respect the order of the field values (won’t fix)
CA-1387, Labcas Upload UI does not send the ProtocolId
CA-1391, Cannot run UnivColoLungImage workflow on labcas-dev
CA-1392, CA-1393, Support rich text
CA-1394, LabCAS UI should generate dataset IDs
CA-1395, Change “NormalizationMethod” to “Method”
CA-1399, Remove HTML tags around DatasetDescription
CA-1403, Implement QAState=public in LabCAS UI
CA-1404, Chrome date input issue
CA-1405, Move Upload button to the top
CA-1408, URL to PI leads back to dataset, but with a “#” at the end
CA-1409, Collaborative Group URLs work only for two collaborative groups
0.0.1 — Jackie
CA-1332, fixed RNA sequence upload
CA-1333, added fields for booleans and URIs.
CA-1345, “Date” and “ProtocolID” fields not appearing in LabCAS UI
CA-1343, LabCAS UI should display images inline and not force the browser to download them
CA-1346, Double metadata entries
CA-1357, People and protocols not updating
CA-1354, Don’t prompt for both Protocol Name and Protocol ID, but display both after uploading
CA-1356, Collaborative group metadata field is plain text, should be restricted values
CA-1355, “OwnerGroup” should be check boxes, not a free text field
CA-1358, On dataset list change “Product” in table header to “Dataset”
CA-1359, Add a N/A option to Collaborative Group
CA-1360, Change name of “Owner Group” to something like “Share data with…”
CA-1362, Show all groups; default to groups of which you are a mamber
CA-1363, Disable upload button if you’re not a member of any group, and add a contact notice
CA-1366, Help text when hovering over “Share Data with…” is weird
CA-1373, “Share data with…” field too error-prone
CA-1364, Who is currently logged in
CA-1365, No logout button
CA-1368, Data may not be immediately available
CA-1374, Make “Generic LabCAS Dataset” the first workflow and rename it to “Standard LabCAS Dataset”
CA-1377, Must distribute Plupload because of GPL
CA-1361, LabCAS UI no longer overrides title & description for “OwnerGroup”
0.0.0 — Unreleased
CA-1331, Release to operations
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