A set of spaCy components to extract information from clinical notes written in French.

Reason this release was yanked:

Issue with the PhraseMatcher

Project description

Tests

EDS-NLP

EDS-NLP provides a set of spaCy components that are used to extract information from clinical notes written in French.

Check out the interactive demo!

If it's your first time with spaCy, we recommend you familiarise yourself with some of their key concepts by looking at the "spaCy 101" page in the documentation.

Quick start

Installation

You can install EDS-NLP via pip:

pip install edsnlp

We recommend pinning the library version in your projects, or use a strict package manager like Poetry.

pip install edsnlp==0.5.0

A first pipeline

Once you've installed the library, let's begin with a very simple example that extracts mentions of COVID19 in a text, and detects whether they are negated.

import spacy

nlp = spacy.blank("fr")

terms = dict(
    covid=["covid", "coronavirus"],
)

# Sentencizer component, needed for negation detection
nlp.add_pipe("eds.sentences")
# Matcher component
nlp.add_pipe("eds.matcher", config=dict(terms=terms))
# Negation detection
nlp.add_pipe("eds.negation")

# Process your text in one call !
doc = nlp("Le patient est atteint de covid")

doc.ents
# Out: (covid,)

doc.ents[0]._.negation
# Out: False

Documentation

Go to the documentation for more information.

Disclaimer

The performances of an extraction pipeline may depend on the population and documents that are considered.

Contributing to EDS-NLP

We welcome contributions ! Fork the project and propose a pull request. Take a look at the dedicated page for detail.

Project details

Release history Release notifications | RSS feed

0.13.1

Oct 10, 2024

0.13.0

Jul 22, 2024

0.12.3

Jun 17, 2024

0.12.2

Jun 17, 2024

0.12.1

Jun 5, 2024

0.12.0

May 22, 2024

0.11.2

Apr 10, 2024

0.11.1

Apr 2, 2024

0.11.0

Mar 29, 2024

0.10.7

Mar 12, 2024

0.10.6

Feb 24, 2024

0.10.5

Jan 29, 2024

0.10.4

Jan 19, 2024

0.10.3

Jan 11, 2024

0.10.2

Dec 20, 2023

0.10.1

Dec 15, 2023

0.10.0

Dec 4, 2023

0.10.0b1 pre-release

Oct 16, 2023

0.9.1

Sep 22, 2023

0.9.0

Sep 15, 2023

0.8.1

May 31, 2023

0.8.0

May 25, 2023

0.7.4

Dec 12, 2022

0.7.3 yanked

Nov 25, 2022

Reason this release was yanked:

Problem with UMLS dependency: tries to write on protected path

0.7.2

Oct 26, 2022

0.7.1

Oct 13, 2022

0.7.0

Sep 6, 2022

0.6.2

Aug 2, 2022

0.6.1

Jul 11, 2022

0.6.0

Jun 17, 2022

0.5.3

May 4, 2022

0.5.2

Apr 29, 2022

0.5.1

Apr 11, 2022

This version

0.5.0 yanked

Apr 8, 2022

Reason this release was yanked:

Issue with the PhraseMatcher

0.4.4

Mar 31, 2022

0.4.3

Mar 18, 2022

0.4.2

Mar 16, 2022

0.4.1

Mar 14, 2022

0.4.0

Mar 8, 2022

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edsnlp 0.5.0

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EDS-NLP

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