Electronic Health Record Analysis with Python.
Project description
|PyPI| |Python Version| |License| |Read the Docs| |Build| |Tests| |Codecov| |pre-commit| |Black|
.. |PyPI| image:: https://img.shields.io/pypi/v/ehrapy.svg
:target: https://pypi-hypernode.com/project/ehrapy/
:alt: PyPI
.. |Python Version| image:: https://img.shields.io/pypi/pyversions/ehrapy
:target: https://pypi-hypernode.com/project/ehrapy
:alt: Python Version
.. |License| image:: https://img.shields.io/github/license/theislab/ehrapy
:target: https://opensource.org/licenses/Apache2.0
:alt: License
.. |Read the Docs| image:: https://img.shields.io/readthedocs/ehrapy/latest.svg?label=Read%20the%20Docs
:target: https://ehrapy.readthedocs.io/
:alt: Read the documentation at https://ehrapy.readthedocs.io/
.. |Build| image:: https://github.com/theislab/ehrapy/workflows/Build%20ehrapy%20Package/badge.svg
:target: https://github.com/theislab/ehrapy/actions?workflow=Package
:alt: Build Package Status
.. |Tests| image:: https://github.com/theislab/ehrapy/workflows/Run%20ehrapy%20Tests/badge.svg
:target: https://github.com/theislab/ehrapy/actions?workflow=Tests
:alt: Run Tests Status
.. |Codecov| image:: https://codecov.io/gh/theislab/ehrapy/branch/master/graph/badge.svg
:target: https://codecov.io/gh/theislab/ehrapy
:alt: Codecov
.. |pre-commit| image:: https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit&logoColor=white
:target: https://github.com/pre-commit/pre-commit
:alt: pre-commit
.. |Black| image:: https://img.shields.io/badge/code%20style-black-000000.svg
:target: https://github.com/psf/black
:alt: Black
.. warning::
ehrapy is still in development.
If you are willing to try out alpha software feel free to install from source or contact us.
ehrapy overview
===============
.. figure:: https://user-images.githubusercontent.com/21954664/150370356-9f9b170d-76d1-4376-9fd7-54f9f3fb2ae4.png
:scale: 100 %
:alt: ehrapy overview
Features
--------
* Exploratory analysis of Electronic Health Records
* Quality control & preprocessing
* Clustering & trajectory inference
* Visualization & Exploration
Installation
------------
You can install *ehrapy* via pip_ from PyPI_:
.. code:: console
$ pip install ehrapy
Usage
-----
Please see the `Usage documentation <Usage_>`_ for details.
.. code:: python
import ehrapy.api as ep
Credits
-------
This package was created with cookietemple_ using Cookiecutter_ based on Hypermodern_Python_Cookiecutter_.
.. _cookietemple: https://cookietemple.com
.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _PyPI: https://pypi-hypernode.com/
.. _Hypermodern_Python_Cookiecutter: https://github.com/cjolowicz/cookiecutter-hypermodern-python
.. _pip: https://pip.pypa.io/
.. _Usage: https://ehrapy.readthedocs.io/en/latest/usage.html
.. |PyPI| image:: https://img.shields.io/pypi/v/ehrapy.svg
:target: https://pypi-hypernode.com/project/ehrapy/
:alt: PyPI
.. |Python Version| image:: https://img.shields.io/pypi/pyversions/ehrapy
:target: https://pypi-hypernode.com/project/ehrapy
:alt: Python Version
.. |License| image:: https://img.shields.io/github/license/theislab/ehrapy
:target: https://opensource.org/licenses/Apache2.0
:alt: License
.. |Read the Docs| image:: https://img.shields.io/readthedocs/ehrapy/latest.svg?label=Read%20the%20Docs
:target: https://ehrapy.readthedocs.io/
:alt: Read the documentation at https://ehrapy.readthedocs.io/
.. |Build| image:: https://github.com/theislab/ehrapy/workflows/Build%20ehrapy%20Package/badge.svg
:target: https://github.com/theislab/ehrapy/actions?workflow=Package
:alt: Build Package Status
.. |Tests| image:: https://github.com/theislab/ehrapy/workflows/Run%20ehrapy%20Tests/badge.svg
:target: https://github.com/theislab/ehrapy/actions?workflow=Tests
:alt: Run Tests Status
.. |Codecov| image:: https://codecov.io/gh/theislab/ehrapy/branch/master/graph/badge.svg
:target: https://codecov.io/gh/theislab/ehrapy
:alt: Codecov
.. |pre-commit| image:: https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit&logoColor=white
:target: https://github.com/pre-commit/pre-commit
:alt: pre-commit
.. |Black| image:: https://img.shields.io/badge/code%20style-black-000000.svg
:target: https://github.com/psf/black
:alt: Black
.. warning::
ehrapy is still in development.
If you are willing to try out alpha software feel free to install from source or contact us.
ehrapy overview
===============
.. figure:: https://user-images.githubusercontent.com/21954664/150370356-9f9b170d-76d1-4376-9fd7-54f9f3fb2ae4.png
:scale: 100 %
:alt: ehrapy overview
Features
--------
* Exploratory analysis of Electronic Health Records
* Quality control & preprocessing
* Clustering & trajectory inference
* Visualization & Exploration
Installation
------------
You can install *ehrapy* via pip_ from PyPI_:
.. code:: console
$ pip install ehrapy
Usage
-----
Please see the `Usage documentation <Usage_>`_ for details.
.. code:: python
import ehrapy.api as ep
Credits
-------
This package was created with cookietemple_ using Cookiecutter_ based on Hypermodern_Python_Cookiecutter_.
.. _cookietemple: https://cookietemple.com
.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _PyPI: https://pypi-hypernode.com/
.. _Hypermodern_Python_Cookiecutter: https://github.com/cjolowicz/cookiecutter-hypermodern-python
.. _pip: https://pip.pypa.io/
.. _Usage: https://ehrapy.readthedocs.io/en/latest/usage.html
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