fijibin

Latest Life-Line version of Fiji for easy inclusion in python projects.

Project description

This software will download the latest Life-Line version of Fiji, make the correct cross-platform binary available and provide a macro submodule which makes automation of Fiji trivial from python.

Video demo

Current Fiji Life-Line version in this package is 2014 November 25.

If you experience any trouble with this module, please submit an issue or send a pull request on github.

Install

pip install fijibin

Usage

>>> import fijibin
>>> fijibin.BIN
'/Users/arve/.bin/Fiji.app/Contents/MacOS/ImageJ-macosx'
>>> fijibin.FIJI_VERSION
'20141125'

fijibin.BIN will point to linux, mac or windows version, depending on the operating system detected via platform.

Macros

import fijibin.macro
macro.run(macro_string_or_list_of_strings)

Refetch binary

>>> from fijibin.fetch import fetch
>>> fetch()

See more in the API reference.

Development

Install dependencies and link development version of fijibin to pip:

git clone https://github.com/arve0/fijibin
cd fijibin
pip install -r requirements.txt

run test

pip install tox
tox

extra output, jump into pdb upon error

DEBUG=fijibin tox -- --pdb -s

build api reference

make docs

Project details

Release history Release notifications | RSS feed

0.3.0

Apr 22, 2015

0.2.1

Apr 16, 2015

This version

0.2.0

Mar 22, 2015

0.1.0

Mar 19, 2015

0.0.5

Feb 17, 2015

0.0.4

Feb 13, 2015

0.0.3

Feb 12, 2015

0.0.2

Feb 8, 2015

0.0.1

Feb 7, 2015

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