Firecloud API bindings and FISS CLI
Project description
====================
Description
====================
Firecloud API bindings and FISS Command-Line interface.
This package was formerly known as "fissfc", but has evolved
to provide more sophisticated abstractions for interacting
with firecloud in addition to the command line tool.
====================
Requirements
====================
Firecloud uses the Google Cloud SDK (https://cloud.google.com/sdk/) to manage
authorization. To use the firecloud CLI or API, you must install the SDK and
login locally with
gcloud auth login
====================
Release Notes
====================
v0.7.4 - FISS functions can now display their source code with the -F option.
v0.7.3 - Improved documentation, with docstrings for every public function.
This enables python's builtin help system to be used from the REPL.
To see all the available firecloud api calls:
% python
>>> import firecloud
>>> help(firecloud.api)
v0.7.2 - Fix some commands that broke with the API changes
v0.7.1 - Add workspace functions for importing entities and creating entity sets.
v0.7.0 - Renamed package "firecloud", replacing "fissfc"
- firecloud_cli.py renamed fiss.py
- firecloud_api.py renamed api.py
Added workspace class for more flexible python interactivity. Example:
>>> w = Workspace.new("broad-firecloud-testing", "my_workspace")
>>> w.bucket()
"fc-92e4ic0a-60fb-454a-8ue0-d0efea803421"
>>> w.lock()
Added better error messaging for unexpected FireCloud Errors
v0.6.2 - Add '--protected' option for workspace creation.
v0.6.1 - Firecloud production API is now https://api.firecloud.org/api
v0.6.0 - Refactored the argument structure for inferring a default project.
Instead of passing the namespace as an optional input to a
subcommand, the project can be overriden explicitly with the -p
top-level flag. This cleans up the syntax for many commands, and
makes the help clearer.
Add --all option to space_list
attr_get:
* attributes now given a a list of positional arguments,
instead of comma-separated
* entity type limited to firecloud supported entities
Fixed help messages for many commands
v0.5.0 - Add python 3 support, so that fissfc should be installable to
either version. A TLS issue may still prevent fissfc from
working on some versions of python.
v0.4.1 - Add attr_get subcommand, as a replacement for fiss annot_get.
Clarify error message.
v0.4.0 - Implement default value for google project into most subcommands
v0.3.2 - Add check in firecloud_api for the existence of gcloud credentials
v0.3.1 - Add confirmation prompt for delete commands, and a
Flag to override them.
v0.3.0 - Added support for Yapsy plugins.
v0.0.1 - Initial Release
Description
====================
Firecloud API bindings and FISS Command-Line interface.
This package was formerly known as "fissfc", but has evolved
to provide more sophisticated abstractions for interacting
with firecloud in addition to the command line tool.
====================
Requirements
====================
Firecloud uses the Google Cloud SDK (https://cloud.google.com/sdk/) to manage
authorization. To use the firecloud CLI or API, you must install the SDK and
login locally with
gcloud auth login
====================
Release Notes
====================
v0.7.4 - FISS functions can now display their source code with the -F option.
v0.7.3 - Improved documentation, with docstrings for every public function.
This enables python's builtin help system to be used from the REPL.
To see all the available firecloud api calls:
% python
>>> import firecloud
>>> help(firecloud.api)
v0.7.2 - Fix some commands that broke with the API changes
v0.7.1 - Add workspace functions for importing entities and creating entity sets.
v0.7.0 - Renamed package "firecloud", replacing "fissfc"
- firecloud_cli.py renamed fiss.py
- firecloud_api.py renamed api.py
Added workspace class for more flexible python interactivity. Example:
>>> w = Workspace.new("broad-firecloud-testing", "my_workspace")
>>> w.bucket()
"fc-92e4ic0a-60fb-454a-8ue0-d0efea803421"
>>> w.lock()
Added better error messaging for unexpected FireCloud Errors
v0.6.2 - Add '--protected' option for workspace creation.
v0.6.1 - Firecloud production API is now https://api.firecloud.org/api
v0.6.0 - Refactored the argument structure for inferring a default project.
Instead of passing the namespace as an optional input to a
subcommand, the project can be overriden explicitly with the -p
top-level flag. This cleans up the syntax for many commands, and
makes the help clearer.
Add --all option to space_list
attr_get:
* attributes now given a a list of positional arguments,
instead of comma-separated
* entity type limited to firecloud supported entities
Fixed help messages for many commands
v0.5.0 - Add python 3 support, so that fissfc should be installable to
either version. A TLS issue may still prevent fissfc from
working on some versions of python.
v0.4.1 - Add attr_get subcommand, as a replacement for fiss annot_get.
Clarify error message.
v0.4.0 - Implement default value for google project into most subcommands
v0.3.2 - Add check in firecloud_api for the existence of gcloud credentials
v0.3.1 - Add confirmation prompt for delete commands, and a
Flag to override them.
v0.3.0 - Added support for Yapsy plugins.
v0.0.1 - Initial Release
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