Skip to main content

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

Project description

This package is a functional magnetic resonance image preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting. This open-source neuroimaging data processing tool is being developed as a part of the MRI image analysis and reproducibility platform offered by the CRN. This pipeline is heavily influenced by the Human Connectome Project analysis pipelines and, as such, the backbone of this pipeline is a python reimplementation of the HCP GenericfMRIVolumeProcessingPipeline.sh script. However, a major difference is that this pipeline is executed using a nipype workflow framework. This allows for each call to a software module or binary to be controlled within the workflows, which removes the need for manual curation at every stage, while still providing all the output and error information that would be necessary for debugging and interpretation purposes. The fmriprep pipeline primarily utilizes FSL tools, but also utilizes ANTs tools at several stages such as skull stripping and template registration. This pipeline was designed to provide the best software implementation for each state of preprocessing, and will be updated as newer and better neuroimaging software become available.

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

fmriprep-1.0.0rc3.tar.gz (5.6 MB view details)

Uploaded Source

File details

Details for the file fmriprep-1.0.0rc3.tar.gz.

File metadata

  • Download URL: fmriprep-1.0.0rc3.tar.gz
  • Upload date:
  • Size: 5.6 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No

File hashes

Hashes for fmriprep-1.0.0rc3.tar.gz
Algorithm Hash digest
SHA256 c8fb87cfd61a8a310a6a7fc8cb62875e28b856749c354e59ce5f29179b8a23ba
MD5 05567e41f2b0c69e8c11a6daa129842b
BLAKE2b-256 5f0b9409dbf04af940565fcb2d1dd0d2fb23679ff95910e3498ae88d47590009

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page