Functional Analysis Description Language Base Package
Project description
func_adl
Construct hierarchical data queries using SQL-like concepts in python.
func_adl Uses an SQL like language, and extracts data and computed values from a ROOT file or an ATLAS xAOD file
and returns them in a columnar format. It is currently used as a central part of two of the ServiceX transformers.
This is the base package that has the backend-agnostic code to query hierarchical data. In all likelihood you will want to install one of the following packages:
- func_adl_xAOD: for running on an ATLAS & CMS experiment xAOD file hosted in ServiceX
- func_adl_uproot: for running on flat root files
- func_adl.xAOD.backend: for running on a local file using docker
See the documentation for more information on what expressions and capabilities are possible in each of these backends.
Captured Variables
Python supports closures in lambda values and functions. This library will resolve those closures at the point where the select method is called. For example (where ds is a dataset):
met_cut = 40
good_met_expr = ds.Where(lambda e: e.met > met_cut).Select(lambda e: e.met)
met_cut = 50
good_met = good_met_expr.value()
The cut will be applied at 40, because that was the value of met_cut when the Where function was called. This will also work for variables captured inside functions.
Syntatic Sugar
There are several python expressions and idioms that are translated behind your back to func_adl. Note that these must occur inside one of the ObjectStream method's lambda functions like Select, SelectMany, or Where.
| Name | Python Expression | func_adl Translation |
|---|---|---|
| List Comprehension | [j.pt() for j in jets] |
jets.Select(lambda j: j.pt()) |
| List Comprehension | [j.pt() for j in jets if abs(j.eta()) < 2.4] |
jets.Where(lambda j: abs(j.eta()) < 2.4).Select(lambda j: j.pt()) |
| List Comprehension | [j.pt()+e.pt() for j in jets for e in electrons] |
jets.Select(lambda j: electrons.Select(lambda e: j.pt()+e.pt()) |
Note: Everything that goes for a list comprehension also goes for a generator expression.
Extensibility
There are two several extensibility points:
EventDatasetshould be sub-classed to provide an executor.EventDatasetcan use Python's type hinting system to allow for editors and other intelligent typing systems to type check expressions. The more type data present, the more the system can help.- Define a function that can be called inside a LINQ expression
- Define new stream methods
- It is possible to insert a call back at a function or method call site that will allow for modification of the
ObjectStreamor the call site'sast.
EventDataSet
An example EventDataSet:
class events(EventDataset):
async def execute_result_async(self, a: ast.AST, title: Optional[str] = None):
await asyncio.sleep(0.01)
return a
and some func_adl code that uses it:
r = (events()
.SelectMany(lambda e: e.Jets('jets'))
.Select(lambda j: j.eta())
.value())
- When the
.value()method is invoked, theexecute_result_asyncwith a completeastrepresenting the query is called. This is the point that one would send it to the backend to actually be processed. - Normally, the constructor of
eventswould take in the name of the dataset to be processed, which could then be used inexecute_result_async.
Typing EventDataset
A minor change to the declaration above, and no change to the query:
class dd_jet:
def pt(self) -> float:
...
def eta(self) -> float:
...
class dd_event:
def Jets(self, bank: str) -> Iterable[dd_jet]:
...
def EventNumber(self, bank='default') -> int
...
class events(EventDataset[dd_event]):
async def execute_result_async(self, a: ast.AST, title: Optional[str] = None):
await asyncio.sleep(0.01)
return a
This is not required, but when this is done:
- Editors that use types to give one a list of options/guesses will now light up as long as they have reasonable type-checking built in.
- If a required argument is missed, an error will be generated
- If a default argument is missed, it will be automatically filled in.
It should be noted that the type and expression follower is not very sophisticated! While it can follow method calls, it won't follow much else!
The code should work find in python 3.11 or if from __future__ import annotations is used.
Type-based callbacks
By adding a function and a reference in the type system, arbitrary code can be executed during the traversing of the func_adl. Keeping the query the same and the events definition the same, we can add the info directly to the python type declarations using a decorator for a class definition:
from func_adl import ObjectStream
from typing import TypeVar
# Generic type is required in order to preserve type checkers ability to see
# changes in the type
T = TypeVar('T')
def add_md_for_type(s: ObjectStream[T], a: ast.Call) -> Tuple[ObjectStream[T], ast.AST]:
return s.MetaData({'hi': 'there'}), a
@func_adl_callback(add_md_for_type)
class dd_event:
def Jets(self, bank: str) -> Iterable[dd_jet]:
...
- When the
.Jets()method is processed, theadd_md_for_typeis called with the current object stream and the ast. add_md_for_typehere adds metadata and returns the updated stream and ast.- Nothing prevents the function from parsing the AST, removing or adding arguments, adding more complex metadata, or doing any of this depending on the arguments in the call site.
Parameterized method calls
These are a very special form of callback that were implemented to support things like inter-op for templates in C++. It allows you to write something like:
result = (ds
.SelectMany(lambda e: e.Jets())
.Select(lambda j: j.getAttribute[float]('moment0'))
.AsAwkward('moment0')
)
Note the [float] in the call to getAttribute. This can only happen if the property getAttribute in the Jet class is marked with the decorator func_adl_parameterized_call:
T = TypeVar('T')
def my_callback(s: ObjectStream[T], a: ast.Call, param_1) -> Tuple[ObjectStream[T], ast.AST, Type]:
...
class Jet:
@func_adl_parameterized_call()
@property
def getAttribute(self):
...
Here, param_1 will be called with set to float. Note that this means at the time when this is called the parameterized values must resolve to an actual value - they aren't converted to C++. In this case, the my_callback could inject MetaData to build a templated call to getAttribute. The tuple that my_callback returns is the same as for add_md_for_type above - except that the third parameter must return the return type of the call.
If more than one argument is used (j.getAttribute['float','int'])['moment0']), then param_1 is a tuple with two items.
Function Definitions
It is useful to have functions that can be called in the backend directly - or use a function call to artificially insert something into the func_adl query stream (like MetaData). For example, the C++ backend
uses this to insert inline-C++ code. The func_adl_callable decorator is used to do this:
def MySqrtProcessor(s: ObjectStream[T], a: ast.Call) -> Tuple[ObjectStream[T], ast.Call]:
'Can add items to the object stream'
new_s = s.MetaData({'j': 'func_stuff'})
return new_s, a
# Declare the typing and name of the function to func_adl
@func_adl_callable(MySqrtProcessor)
def MySqrt(x: float) -> float:
...
r = (events()
.SelectMany(lambda e: e.Jets('jets'))
.Select(lambda j: MySqrt(j.eta()))
.value())
In the above sample, the call to MySqrt will be passed back to the backend. However, the MetaData will be inserted into the stream before the call. One can use C++ do define the MySqrt function (or similar).
Note that if MySqrt is defined always in the backend with no additional data needed, one can skip the MySqrtProcessor in the decorator call.
Adding new Collection API's
Functions like First should not be present in ObjectStream as that is the top level set of definitions. However, inside the event context, they make a lot of sense. The type following code needs a way to track these (the type hint system needs no modification, just declare your collections in your Event object appropriately).
For examples, see the test_type_based_replacement file. The class-level decorator is called register_func_adl_os_collection.
Development
After a new release has been built and passes the tests you can release it by creating a new release on github. An action that runs when a release is "created" will send it to pypi.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file func_adl-3.0b3.tar.gz.
File metadata
- Download URL: func_adl-3.0b3.tar.gz
- Upload date:
- Size: 28.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.8.2 readme-renderer/33.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.63.0 importlib-metadata/4.11.2 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.8.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 1469335afc3c50ce6a788973d8a4604ff7ffe89f98ad8639261d2aa49845c745 |
|
| MD5 | 68e3264f8f19b635c713bb8c73689650 |
|
| BLAKE2b-256 | 88f492e1bc269c1417bcdba67b74cab304d65d7f34c5f5c9f0378bc78d6c391b |
File details
Details for the file func_adl-3.0b3-py3-none-any.whl.
File metadata
- Download URL: func_adl-3.0b3-py3-none-any.whl
- Upload date:
- Size: 27.8 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.8.2 readme-renderer/33.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.63.0 importlib-metadata/4.11.2 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.8.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | a68d43462739e0f8192e0acfab77fb28d1c99fe8f54281b53a5af6cec8e5add2 |
|
| MD5 | 21de7d23be92e6538bfe3283755ad1a5 |
|
| BLAKE2b-256 | bf5ff7501cc3903b1b814c22bb092391b48cd75b7254d3cbf0174814f52cbc0c |
